Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   MUB28_RS02205 Genome accession   NZ_CP094945
Coordinates   409336..411150 (+) Length   604 a.a.
NCBI ID   WP_014727346.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain VHProbi R08     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 404336..416150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUB28_RS02180 (MUB28_02180) - 404413..405165 (-) 753 WP_014727345.1 NUDIX hydrolase -
  MUB28_RS02185 (MUB28_02185) - 405229..406334 (-) 1106 Protein_380 AAA family ATPase -
  MUB28_RS02190 (MUB28_02190) gdhA 406678..408030 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  MUB28_RS02195 (MUB28_02195) - 408288..408698 (+) 411 WP_011680804.1 peptide deformylase -
  MUB28_RS02200 (MUB28_02200) rcrR 408889..409332 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  MUB28_RS02205 (MUB28_02205) rcrP 409336..411150 (+) 1815 WP_014727346.1 ABC transporter ATP-binding protein Regulator
  MUB28_RS02210 (MUB28_02210) rcrQ 411140..412918 (+) 1779 WP_014727347.1 ABC transporter ATP-binding protein Regulator
  MUB28_RS02215 (MUB28_02215) - 413074..413445 (+) 372 WP_041829277.1 hypothetical protein -
  MUB28_RS02220 (MUB28_02220) - 413792..414632 (+) 841 Protein_387 HAMP domain-containing sensor histidine kinase -
  MUB28_RS02225 (MUB28_02225) pyrH 414868..415605 (+) 738 WP_002949867.1 UMP kinase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67196.88 Da        Isoelectric Point: 5.5906

>NTDB_id=674395 MUB28_RS02205 WP_014727346.1 409336..411150(+) (rcrP) [Streptococcus thermophilus strain VHProbi R08]
MFKIFKRLTAKELSMIVLAVIFVCLNVYLNLKIPDYMSDIITLLSTKGTKASDIFAWNTDAPGMRMLLMSFAGFMASVVV
SFLAARTASSFTTRLRDDIFHQVLDFSDAEIKKFSIPSLLTRTTNDITQLQMALTMGLQVITQGPIMAIWAITKIADKNG
NWLLALLVAVAVIAILMLFLLIMVMPKQRLIQTLTDKLNSVTRESLTGIRVVRAYNAESYQEDKFEKANTDLTQNNLFIG
RSFALLTPVMTAVSSGLTLAIYWIGAHLIEDVKIPTDPTKIADAMKDKVHLFSDMVVYSSYAMQVVMGFMMMMVVFFLLP
RAVVAAGRINEVLDTQSSVSYPEYSSEKPKEVGTVEFEDVSFRYSETSEPVLEHVSFKAKKGDTVALIGSTGSGKSTLVN
LIPRFYDATQGTIKVDGVDVRYYDHETLHNIVGYIPQKAVLFSGDITSNMTMGTSNNSPLDDAKIWEALEFAQGKDFVEN
KEGQLKAEVAQAGSNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTERKLRQELAEKTQDMTKLIVAQRISTIMDA
DQILVLDKGKVVGQGTHEELLANNEVYQEIAYSQLSKEELEDGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=674395 MUB28_RS02205 WP_014727346.1 409336..411150(+) (rcrP) [Streptococcus thermophilus strain VHProbi R08]
ATGTTTAAAATTTTTAAACGTTTGACGGCAAAAGAGTTAAGTATGATTGTCTTAGCTGTGATATTTGTTTGTTTGAACGT
CTATCTAAACTTGAAAATTCCAGACTATATGTCTGACATTATAACCCTCTTATCAACCAAGGGGACTAAGGCATCGGATA
TTTTTGCTTGGAATACGGATGCCCCAGGGATGCGAATGCTTTTAATGTCTTTTGCGGGCTTTATGGCCTCTGTAGTGGTT
AGTTTTCTAGCTGCCAGAACAGCATCTAGTTTTACCACTCGTCTTCGTGATGATATCTTCCATCAGGTTTTAGATTTTTC
GGATGCCGAGATTAAGAAATTCTCTATTCCTAGTCTTTTGACCCGTACGACAAACGATATTACACAATTACAGATGGCAC
TGACCATGGGGTTACAGGTTATTACACAGGGACCTATTATGGCAATCTGGGCTATTACAAAGATTGCTGATAAAAATGGG
AATTGGCTTCTTGCCTTGCTTGTGGCTGTGGCAGTAATTGCCATTCTTATGCTCTTCCTCTTGATTATGGTCATGCCTAA
GCAACGTTTGATTCAGACTCTGACAGATAAACTCAATAGTGTGACGCGTGAATCTCTTACTGGGATTCGTGTGGTGCGTG
CCTATAACGCCGAGAGTTATCAAGAGGATAAGTTTGAAAAGGCCAATACTGATCTAACCCAAAACAATCTTTTCATCGGT
CGTTCTTTTGCCTTGCTGACACCGGTAATGACTGCTGTATCTAGTGGTTTGACGCTAGCTATTTATTGGATTGGTGCGCA
TCTGATTGAAGATGTTAAGATTCCAACAGATCCAACTAAGATTGCTGATGCCATGAAAGACAAGGTTCATCTCTTCTCAG
ACATGGTGGTTTACTCATCTTATGCCATGCAGGTTGTTATGGGATTCATGATGATGATGGTTGTCTTCTTCCTTCTTCCA
CGAGCAGTTGTAGCAGCTGGACGTATCAATGAAGTTTTAGATACTCAATCTTCAGTTTCTTACCCTGAATATAGTTCTGA
AAAGCCTAAAGAAGTCGGAACTGTTGAATTTGAAGACGTTTCCTTCCGTTATTCTGAAACTTCAGAGCCTGTTTTGGAGC
ATGTTAGCTTCAAAGCTAAAAAAGGAGATACGGTTGCTCTTATTGGTTCGACTGGATCTGGTAAATCAACTCTTGTCAAC
CTTATCCCACGTTTTTACGATGCAACGCAAGGAACTATAAAGGTCGATGGTGTAGATGTGAGATATTACGATCATGAAAC
CTTGCACAATATTGTTGGTTATATCCCACAAAAGGCAGTACTTTTCTCAGGGGACATCACGTCAAATATGACGATGGGAA
CCAGCAATAACAGCCCTCTTGATGACGCTAAAATTTGGGAAGCTCTCGAATTTGCTCAAGGAAAAGACTTTGTTGAAAAT
AAAGAAGGTCAACTTAAGGCAGAAGTGGCTCAAGCTGGGTCTAACTTCTCAGGTGGTCAGAAACAACGTCTGGCTATTGC
GCGTGCACTTGCCCGTAAGCCTGAAATCTTGATCTTTGACGATTCCTTCTCAGCTTTGGACTATAAGACCGAACGCAAGT
TGCGTCAAGAATTGGCTGAAAAAACACAAGATATGACCAAGTTGATTGTTGCGCAACGCATCTCTACTATTATGGATGCT
GACCAAATCTTAGTTCTTGATAAAGGTAAGGTCGTTGGTCAAGGAACCCACGAGGAACTCTTGGCTAATAATGAGGTTTA
CCAAGAAATTGCCTATTCACAATTGTCTAAGGAGGAGTTAGAAGATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-271)

ABC transporter (ABC_tran)

(372-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

67.107

100

0.672