Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   MUO44_RS07565 Genome accession   NZ_CP094928
Coordinates   1580939..1581436 (-) Length   165 a.a.
NCBI ID   WP_001789864.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1575939..1586436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUO44_RS07540 (MUO44_07540) gcvPB 1576101..1577573 (-) 1473 WP_000202189.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  MUO44_RS07545 (MUO44_07545) gcvPA 1577566..1578912 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  MUO44_RS07550 (MUO44_07550) gcvT 1578932..1580023 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  MUO44_RS07555 (MUO44_07555) - 1580182..1580706 (-) 525 WP_001015121.1 shikimate kinase -
  MUO44_RS07560 (MUO44_07560) - 1580696..1580842 (-) 147 WP_001789879.1 hypothetical protein -
  MUO44_RS07565 (MUO44_07565) comGF 1580939..1581436 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  MUO44_RS07570 (MUO44_07570) comGE 1581354..1581653 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  MUO44_RS07575 (MUO44_07575) comGD 1581640..1582086 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  MUO44_RS07580 (MUO44_07580) comGC 1582064..1582375 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  MUO44_RS07585 (MUO44_07585) comGB 1582389..1583459 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  MUO44_RS07590 (MUO44_07590) comGA 1583431..1584405 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  MUO44_RS07595 (MUO44_07595) - 1584457..1585080 (-) 624 WP_001223010.1 MBL fold metallo-hydrolase -
  MUO44_RS07600 (MUO44_07600) - 1585077..1585406 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  MUO44_RS07605 (MUO44_07605) - 1585406..1586392 (-) 987 WP_000161314.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19164.88 Da        Isoelectric Point: 10.2192

>NTDB_id=674197 MUO44_RS07565 WP_001789864.1 1580939..1581436(-) (comGF) [Staphylococcus aureus strain 8]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=674197 MUO44_RS07565 WP_001789864.1 1580939..1581436(-) (comGF) [Staphylococcus aureus strain 8]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(67-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

100

100

1
  comGF Staphylococcus aureus N315

96.364

100

0.964