Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG846_RS16905 Genome accession   NZ_CP109314
Coordinates   3656313..3657722 (-) Length   469 a.a.
NCBI ID   WP_329013495.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01601     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3651313..3662722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG846_RS16880 (OG846_16900) - 3651614..3652219 (-) 606 WP_329013489.1 hypothetical protein -
  OG846_RS16885 (OG846_16905) - 3652255..3652794 (-) 540 WP_217465152.1 SigE family RNA polymerase sigma factor -
  OG846_RS16890 (OG846_16910) - 3653078..3653953 (-) 876 WP_217465153.1 A/G-specific adenine glycosylase -
  OG846_RS16895 (OG846_16915) - 3654135..3654962 (+) 828 WP_329013492.1 hypothetical protein -
  OG846_RS16900 (OG846_16920) disA 3655108..3656232 (-) 1125 WP_161147461.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG846_RS16905 (OG846_16925) radA/sms 3656313..3657722 (-) 1410 WP_329013495.1 DNA repair protein RadA Machinery gene
  OG846_RS16910 (OG846_16930) - 3657966..3659678 (+) 1713 WP_329013497.1 hypothetical protein -
  OG846_RS16915 (OG846_16935) - 3659686..3660504 (-) 819 WP_329013500.1 hypothetical protein -
  OG846_RS16920 (OG846_16940) - 3660576..3661508 (+) 933 WP_329013502.1 Ppx/GppA phosphatase family protein -
  OG846_RS16925 (OG846_16945) - 3661585..3662397 (+) 813 WP_329013505.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49609.76 Da        Isoelectric Point: 8.2515

>NTDB_id=674030 OG846_RS16905 WP_329013495.1 3656313..3657722(-) (radA/sms) [Streptomyces sp. NBC_01601]
MATRTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTSSALPIGQVDGRQATARTTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASEEHKTLYVTGEESASQVRMRADRIRALDDHLYLAAETDLSAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAARLGFTHALVPGDPGKVPAGMKVVEVADVGDALRVLPRSRRREAPRETEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=674030 OG846_RS16905 WP_329013495.1 3656313..3657722(-) (radA/sms) [Streptomyces sp. NBC_01601]
ATGGCCACCCGTACCAAGACCGCCAAGGACCGTCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGTACGACGGCTCCCGGCC
GCGTCACCAGCTCCGCCCTGCCCATCGGCCAGGTCGACGGCCGCCAGGCCACCGCCCGCACCACCGGCGTCCCGGAGCTG
GACCGGGTGCTCGGCGGCGGACTCGTACCCGGCGCGGTGGTGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACGCT
GCTGCTCGACGTGGCGGCGAAGTCGGCGAGCGAGGAGCACAAGACCCTCTATGTGACCGGCGAGGAGTCCGCGAGCCAGG
TCCGGATGCGCGCCGACCGCATCCGCGCCCTGGACGACCACCTCTATCTGGCCGCCGAGACCGATCTGTCCGCCGTCCTC
GGCCACTTGGACGCGGTCAAGCCCTCCCTGCTGATCCTGGACTCGGTGCAGACGGTCGCCTCCCCCGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTCCGCGAGGTGGCCGGCGCCCTGATCCGCGCCTCCAAGGAACGCGGCATGTCCACCCTGC
TGGTGGGCCACGTCACCAAGGACGGTGCCATCGCGGGCCCCCGCCTGCTGGAGCACCTGGTCGACGTCGTCCTGAGCTTC
GAGGGCGACCGGCACGCCCGGCTGCGCCTGGTGCGCGGCGTGAAGAACCGGTACGGGGCGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCAGCGGCCTGTTCCTGACCCGGCGTGCCGAGCCGGTGCCCG
GCACCTGTCTGACGGTGACGCTGGAGGGACGCCGTCCGCTGGTGGCCGAGGTGCAGGCGCTGACCGTGGACTCCCAGATC
CCCTCCCCCCGCCGCACCACCTCGGGCCTGGAGACCTCCCGTGTCTCGATGATGCTGGCGGTGCTGGAGCAGCGCGGCCG
GATCAGCGCGCTCGGCAAGCGGGACATCTACTCCGCGACCGTGGGCGGGGTGAAGCTGTCCGAACCCGCGGCCGACCTGG
CCATCGCGCTGGCGCTCGCCTCGGCGGCCAGCGACACCCCGCTGCCGAAGAATCTGGTCGCCATCGGTGAGGTGGGTCTC
GCCGGCGAGGTCAGACGCGTCACAGGCGTGCAGCGCAGGCTCTCGGAAGCGGCCCGGCTGGGCTTCACGCACGCGCTCGT
GCCGGGCGATCCGGGCAAGGTCCCGGCCGGGATGAAGGTCGTGGAGGTCGCCGACGTGGGCGACGCGCTGCGGGTGCTGC
CCCGCTCCCGTCGCCGAGAGGCCCCGCGGGAGACGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

96.588

0.422
  radA Streptococcus mitis NCTC 12261

42.384

96.588

0.409
  radA Streptococcus pneumoniae D39

42.444

95.949

0.407
  radA Streptococcus pneumoniae TIGR4

42.444

95.949

0.407
  radA Streptococcus mitis SK321

42.444

95.949

0.407
  radA Streptococcus pneumoniae R6

42.444

95.949

0.407
  radA Streptococcus pneumoniae Rx1

42.444

95.949

0.407