Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MUO47_RS05890 Genome accession   NZ_CP094923
Coordinates   1170080..1170475 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 1824     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1165080..1175475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUO47_RS05865 (MUO47_05850) thiE 1165541..1166182 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  MUO47_RS05870 (MUO47_05855) thiM 1166184..1166975 (-) 792 WP_001108478.1 hydroxyethylthiazole kinase -
  MUO47_RS05875 (MUO47_05860) thiD 1166959..1167789 (-) 831 WP_000594942.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MUO47_RS05880 (MUO47_05865) tenA 1167782..1168471 (-) 690 WP_000396074.1 thiaminase II -
  MUO47_RS05885 (MUO47_05870) sceD 1168996..1169691 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  MUO47_RS05890 (MUO47_05875) ssb 1170080..1170475 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  MUO47_RS05895 (MUO47_05880) - 1170669..1171109 (+) 441 WP_000846746.1 YwpF-like family protein -
  MUO47_RS05900 (MUO47_05885) fabZ 1171168..1171608 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MUO47_RS05905 (MUO47_05890) murA 1171642..1172907 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MUO47_RS05910 (MUO47_05895) - 1173018..1173251 (-) 234 WP_000384523.1 DUF1146 family protein -
  MUO47_RS05915 (MUO47_05900) - 1173383..1173475 (-) 93 WP_001790611.1 hypothetical protein -
  MUO47_RS05920 (MUO47_05905) - 1173813..1174217 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=673994 MUO47_RS05890 WP_000932694.1 1170080..1170475(-) (ssb) [Staphylococcus aureus strain 1824]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=673994 MUO47_RS05890 WP_000932694.1 1170080..1170475(-) (ssb) [Staphylococcus aureus strain 1824]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992