Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   MUO47_RS03060 Genome accession   NZ_CP094923
Coordinates   632473..632970 (-) Length   165 a.a.
NCBI ID   WP_029694050.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 1824     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 627473..637970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUO47_RS03035 (MUO47_03020) gcvPB 627635..629107 (-) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  MUO47_RS03040 (MUO47_03025) gcvPA 629100..630446 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  MUO47_RS03045 (MUO47_03030) gcvT 630466..631557 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  MUO47_RS03050 (MUO47_03035) - 631716..632240 (-) 525 WP_001015121.1 shikimate kinase -
  MUO47_RS03055 (MUO47_03040) - 632230..632376 (-) 147 WP_001789879.1 hypothetical protein -
  MUO47_RS03060 (MUO47_03045) comGF 632473..632970 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  MUO47_RS03065 (MUO47_03050) comGE 632888..633187 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  MUO47_RS03070 (MUO47_03055) comGD 633174..633620 (-) 447 WP_072433556.1 competence type IV pilus minor pilin ComGD Machinery gene
  MUO47_RS03075 (MUO47_03060) comGC 633598..633909 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  MUO47_RS03080 (MUO47_03065) comGB 633923..634993 (-) 1071 Protein_612 competence type IV pilus assembly protein ComGB -
  MUO47_RS03085 (MUO47_03070) comGA 634965..635939 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  MUO47_RS03090 (MUO47_03075) - 635991..636614 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  MUO47_RS03095 (MUO47_03080) - 636611..636940 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  MUO47_RS03100 (MUO47_03085) - 636940..637926 (-) 987 WP_000161314.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19199.92 Da        Isoelectric Point: 10.2192

>NTDB_id=673976 MUO47_RS03060 WP_029694050.1 632473..632970(-) (comGF) [Staphylococcus aureus strain 1824]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIELRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTSFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=673976 MUO47_RS03060 WP_029694050.1 632473..632970(-) (comGF) [Staphylococcus aureus strain 1824]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAACTTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CTTCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(68-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

96.97

100

0.97
  comGF Staphylococcus aureus N315

96.97

100

0.97