Detailed information    

insolico Bioinformatically predicted

Overview


Name   eeP   Type   Regulator
Locus tag   lgb_RS09520 Genome accession   NZ_CP094882
Coordinates   1965369..1966616 (-) Length   415 a.a.
NCBI ID   WP_019292980.1    Uniprot ID   -
Organism   Lactococcus petauri strain B1726     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1960369..1971616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  lgb_RS10300 - 1961900..1962544 (-) 645 Protein_1848 PolC-type DNA polymerase III N-terminal domain-containing protein -
  lgb_RS09510 (lgb_01885) - 1962650..1963024 (-) 375 WP_019292978.1 hypothetical protein -
  lgb_RS09515 (lgb_01886) - 1963492..1965342 (-) 1851 WP_019292979.1 proline--tRNA ligase -
  lgb_RS09520 (lgb_01887) eeP 1965369..1966616 (-) 1248 WP_019292980.1 RIP metalloprotease RseP Regulator
  lgb_RS09525 (lgb_01888) - 1966793..1967587 (-) 795 WP_019291563.1 phosphatidate cytidylyltransferase -
  lgb_RS09530 (lgb_01889) - 1967584..1968321 (-) 738 WP_019292981.1 isoprenyl transferase -
  lgb_RS09535 (lgb_01890) yajC 1968521..1968856 (-) 336 WP_019292982.1 preprotein translocase subunit YajC -
  lgb_RS09540 (lgb_01891) - 1968931..1969578 (-) 648 WP_019292983.1 DNA alkylation repair protein -
  lgb_RS09545 (lgb_01892) rlmH 1969575..1970054 (-) 480 WP_019291566.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  lgb_RS09550 (lgb_01893) htrA 1970358..1971575 (+) 1218 WP_019291567.1 S1C family serine protease Regulator

Sequence


Protein


Download         Length: 415 a.a.        Molecular weight: 45088.57 Da        Isoelectric Point: 6.5158

>NTDB_id=673958 lgb_RS09520 WP_019292980.1 1965369..1966616(-) (eeP) [Lactococcus petauri strain B1726]
MIQTLVTFIIVFGIIVVVHEYGHLFFAKRAGILVREFSIGMGPKIFAHQAKDGTFYSIRILPLGGYVRMAGWGDDTTEIK
KGTPASLMIVENQVVKINLSERVTLENSVPMLVTEYDFEKALFIEGEVFGETKRYSVDHDATIIEADGTELRIAPRDVQY
QSASVLGKILTNFAGPLNNFILGIIAFIIITFMQGGVPSNTNQIGQVQSGTPAYSAGLQSKDKIQAVNGEKTNNWEEVVQ
RIGANDGSEIKLDIERAGATKTLELKPEKIDGRYRIGITQTIKTGFLDKLTGGFTQAANATTLIFKALGNLIAQPSLDKL
GGPVAIYDLSGQAAREGLLSVIALLAMLSINLGIVNLIPIPVLDGGKIVLNIVEALRGKPLSQEKEGILTLVGLVFMVVL
MIAVTWNDILRAFIR

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=673958 lgb_RS09520 WP_019292980.1 1965369..1966616(-) (eeP) [Lactococcus petauri strain B1726]
TTGATTCAAACATTGGTAACATTTATCATTGTCTTTGGTATTATTGTTGTTGTACATGAGTATGGTCATCTGTTCTTTGC
TAAGCGCGCGGGGATTTTAGTCCGCGAGTTTTCCATTGGAATGGGCCCCAAAATTTTTGCACATCAAGCCAAAGATGGTA
CGTTTTATAGCATTCGTATACTTCCTCTTGGAGGTTATGTCCGCATGGCGGGCTGGGGCGATGATACAACGGAAATAAAA
AAAGGAACCCCGGCATCTTTGATGATTGTTGAAAATCAGGTGGTTAAAATTAATCTTTCTGAGCGGGTGACTTTGGAAAA
TAGTGTCCCCATGCTGGTCACTGAATACGATTTTGAAAAAGCACTTTTCATCGAAGGAGAAGTTTTTGGTGAAACAAAAC
GTTATTCAGTTGACCATGATGCAACAATTATCGAAGCGGATGGCACGGAACTTCGTATCGCTCCACGAGACGTACAATAT
CAAAGTGCCAGCGTTCTCGGCAAGATTTTAACAAATTTTGCTGGTCCTTTAAATAACTTTATTTTAGGGATTATAGCTTT
TATTATCATCACTTTTATGCAAGGTGGTGTACCTTCTAATACAAATCAAATCGGACAAGTCCAATCTGGCACCCCTGCTT
ATTCGGCAGGTTTACAGTCAAAGGATAAAATCCAAGCAGTCAATGGTGAAAAAACCAATAACTGGGAAGAAGTTGTCCAA
AGGATTGGTGCAAATGATGGCAGTGAAATCAAGCTGGATATCGAACGTGCAGGTGCGACGAAGACACTGGAGCTCAAGCC
AGAAAAAATTGACGGAAGATACCGCATTGGTATCACTCAAACAATCAAAACAGGCTTTTTAGATAAGCTAACGGGTGGCT
TTACTCAGGCTGCTAATGCAACAACGCTTATTTTTAAAGCTTTAGGTAACCTCATTGCACAGCCAAGTCTTGATAAACTT
GGTGGACCCGTTGCCATTTATGATTTAAGTGGGCAAGCAGCCCGAGAAGGCCTATTATCTGTTATCGCTTTACTTGCCAT
GCTCTCAATTAATCTGGGAATCGTAAATTTAATCCCAATCCCCGTCCTTGACGGAGGGAAAATTGTCCTCAATATTGTTG
AGGCCCTACGAGGCAAACCACTTTCACAAGAAAAAGAAGGAATTTTAACACTTGTTGGTCTTGTCTTTATGGTGGTCTTG
ATGATTGCTGTGACTTGGAATGATATCCTCCGAGCCTTTATTAGATAA

Domains


Predicted by InterproScan.

(204-256)

(7-400)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

56.086

100

0.566

  eeP Streptococcus thermophilus LMD-9

55.847

100

0.564