Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   MTP21_RS11790 Genome accession   NZ_CP094880
Coordinates   2610398..2611012 (+) Length   204 a.a.
NCBI ID   WP_020333941.1    Uniprot ID   A0AAN0Y4A1
Organism   Vibrio natriegens strain WPAGA4     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2605398..2616012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP21_RS11770 - 2605638..2606549 (-) 912 WP_014232939.1 ABC transporter ATP-binding protein -
  MTP21_RS11775 - 2606855..2608525 (-) 1671 WP_243977138.1 SulP family inorganic anion transporter -
  MTP21_RS11780 can 2608805..2609473 (+) 669 WP_014232941.1 carbonate dehydratase -
  MTP21_RS11785 hpt 2609550..2610080 (-) 531 WP_014232942.1 hypoxanthine phosphoribosyltransferase -
  MTP21_RS11790 opaR 2610398..2611012 (+) 615 WP_020333941.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  MTP21_RS11795 lpdA 2611137..2612564 (-) 1428 WP_014232944.1 dihydrolipoyl dehydrogenase -
  MTP21_RS11800 aceF 2612831..2614723 (-) 1893 WP_243974773.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23655.95 Da        Isoelectric Point: 6.3780

>NTDB_id=673889 MTP21_RS11790 WP_020333941.1 2610398..2611012(+) (opaR) [Vibrio natriegens strain WPAGA4]
MDSIAKRARTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARDNIANITSAMIELVNQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEICNTHQPE
HLTNLFHGICYSLFVQANRFKGEDELKNLVSSYLDMLCIYDRNQ

Nucleotide


Download         Length: 615 bp        

>NTDB_id=673889 MTP21_RS11790 WP_020333941.1 2610398..2611012(+) (opaR) [Vibrio natriegens strain WPAGA4]
ATGGACTCAATTGCAAAGAGAGCCCGTACTAGGCTTTCCCCTATTAAGCGTAAACAACAACTCATGGAAATCGCGTTGGA
AGTATTTGCGCGTCGCGGTATTGGCCGTGGTGGTCATGCGGATATCGCTGAAATCGCGCAGGTTTCTGTTGCTACCGTTT
TTAACTACTTCCCAACTCGTGAAGATCTCGTTGATGAAGTGCTGAACCACGTAGTACGTCAGTTCTCGAACTTCCTTTCA
GATAATATCGATCTAGACCTACACGCTCGTGACAATATTGCGAATATCACCAGCGCAATGATTGAGTTGGTTAATCAAGA
TTGCCACTGGCTGAAAGTATGGTTTGAGTGGAGCGCATCGACACGCGACGAAGTTTGGCCACTATTCGTGTCAACCAACC
GCACCAACCAGCTGTTGGTACAGAACATGTTTATCAAAGCAATTGAGCGTGGTGAAATTTGCAACACGCATCAACCAGAA
CATTTGACTAACTTGTTCCACGGCATTTGCTACTCACTGTTTGTACAAGCAAACCGTTTTAAGGGTGAAGATGAGCTGAA
AAACCTCGTAAGTTCATACCTTGATATGCTTTGTATTTACGATCGCAATCAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

92.079

99.02

0.912
  hapR Vibrio cholerae C6706

71.717

97.059

0.696
  hapR Vibrio cholerae strain A1552

71.717

97.059

0.696