Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   MUG61_RS23700 Genome accession   NZ_CP094851
Coordinates   5143973..5144530 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain R20-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5138973..5149530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUG61_RS23680 (MUG61_23675) pilR 5140250..5141587 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  MUG61_RS23685 (MUG61_23680) thiO 5141633..5142727 (-) 1095 WP_012614545.1 glycine oxidase ThiO -
  MUG61_RS23690 (MUG61_23685) - 5142862..5143371 (+) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  MUG61_RS23695 (MUG61_23690) - 5143477..5143917 (+) 441 WP_254856905.1 Tfp pilus assembly protein FimT/FimU -
  MUG61_RS23700 (MUG61_23695) pilV 5143973..5144530 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  MUG61_RS23705 (MUG61_23700) pilW 5144527..5145351 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  MUG61_RS23710 (MUG61_23705) pilX 5145348..5145935 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  MUG61_RS23715 (MUG61_23710) pilY1 5145947..5149438 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=673608 MUG61_RS23700 WP_003119423.1 5143973..5144530(+) (pilV) [Pseudomonas aeruginosa strain R20-14]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=673608 MUG61_RS23700 WP_003119423.1 5143973..5144530(+) (pilV) [Pseudomonas aeruginosa strain R20-14]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995