Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OH775_RS22930 Genome accession   NZ_CP109301
Coordinates   5038001..5039410 (+) Length   469 a.a.
NCBI ID   WP_327430649.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01615     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5033001..5044410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH775_RS22915 (OH775_22865) - 5034053..5034985 (-) 933 WP_327430652.1 Ppx/GppA phosphatase family protein -
  OH775_RS22920 (OH775_22870) - 5035057..5035917 (+) 861 WP_327430651.1 hypothetical protein -
  OH775_RS22925 (OH775_22875) - 5036038..5037804 (-) 1767 WP_406474892.1 BACON domain-containing protein -
  OH775_RS22930 (OH775_22880) radA/sms 5038001..5039410 (+) 1410 WP_327430649.1 DNA repair protein RadA Machinery gene
  OH775_RS22935 (OH775_22885) disA 5039479..5040603 (+) 1125 WP_406474895.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OH775_RS22940 (OH775_22890) - 5040804..5041613 (-) 810 WP_406474897.1 hypothetical protein -
  OH775_RS22945 (OH775_22895) - 5042038..5042946 (+) 909 WP_406474899.1 A/G-specific adenine glycosylase -
  OH775_RS22950 (OH775_22900) - 5043244..5043795 (+) 552 WP_327430645.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49785.98 Da        Isoelectric Point: 8.0022

>NTDB_id=673544 OH775_RS22930 WP_327430649.1 5038001..5039410(+) (radA/sms) [Streptomyces sp. NBC_01615]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKDRGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKIPPGMKVLEVADMGDALRVLPRSRRREAPREEEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=673544 OH775_RS22930 WP_327430649.1 5038001..5039410(+) (radA/sms) [Streptomyces sp. NBC_01615]
ATGGCTGCCCGTACGAAAACCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGGACGACGACTCCGGGCC
GCGTCACCACCTCCGCAGTGCCCATCGGGCAGGTCGACGGCCGGCAGGCCACCGCCCGCTCCACCGGCGTGCCCGAGCTG
GACCGCGTCCTCGGCGGCGGTCTCGTGCCCGGCGCGGTCGTCCTGGTCGCGGGCGAGCCGGGGGTCGGCAAGTCCACGCT
CCTCCTCGACGTGGCGGCCAAGTCGGCCAGCGACGAGCACCGCACGCTGTATGTCACGGGTGAGGAGTCGGCGAGCCAGG
TGCGCCTCCGCGCCGACCGCATCAAGGCGATCGACGACCACCTCTACCTGGCCGCCGAAACCGACCTGGCCGCCGTCCTC
GGCCACTTGGACGCGGTGAAGCCGTCCCTGCTCATCCTGGACTCCGTACAGACGGTCGCCTCCCCGGAGATCGACGGAGC
GCCCGGCGGCATGGCCCAGGTGCGGGAGGTCGCCGGAGCACTCATCCGCGCCTCCAAGGACCGCGGCATGTCCACCCTCC
TCGTGGGCCACGTCACCAAGGACGGCGCGATCGCGGGCCCCCGCCTGCTCGAACACCTCGTGGACGTCGTCCTGAGCTTC
GAGGGCGACCGGCACGCGCGCCTCAGGCTGGTCCGAGGGGTCAAGAACCGTTACGGGACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGAGCGGCCTGTTCCTGACCCGCCGCGCCGAGCCGGTCCCGG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCCCTGGTCGCCGAGGTCCAGGCGCTCACGGTCGACTCACAGATC
CCCTCCCCCCGTCGTACGACGTCCGGTCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTTCTGGAGCAGCGCGGCCG
GATCACCGCCCTCGGGAAGCGGGACATCTACTCGGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCCGCAGCGGACCTCG
CGATCGCACTCGCCCTCGCCTCCGCGGCGAGCGACACCCCGCTCCCCAAAAACCTCGTGGCGATCGGCGAAGTGGGGCTC
GCGGGCGAGGTCAGACGGGTCACGGGAGTCCAGCGCCGGCTCGCCGAAGCCCACCGCCTGGGCTTCACGCACGCCCTCGT
ACCGACCGACCCGGGCAAGATCCCTCCCGGTATGAAGGTCCTGGAAGTCGCCGACATGGGCGACGCTCTGCGGGTCCTCC
CGCGCTCCCGTCGTCGAGAGGCCCCACGGGAGGAGGAAGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.588

0.418
  radA Streptococcus mitis NCTC 12261

43.111

95.949

0.414
  radA Streptococcus mitis SK321

43.111

95.949

0.414
  radA Streptococcus pneumoniae TIGR4

42.667

95.949

0.409
  radA Streptococcus pneumoniae D39

42.667

95.949

0.409
  radA Streptococcus pneumoniae Rx1

42.667

95.949

0.409
  radA Streptococcus pneumoniae R6

42.667

95.949

0.409