Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MUA21_RS08770 Genome accession   NZ_CP094825
Coordinates   1765955..1766374 (-) Length   139 a.a.
NCBI ID   WP_073346080.1    Uniprot ID   -
Organism   Staphylococcus ureilyticus strain IVB6236     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1760955..1771374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA21_RS08745 (MUA21_08715) thiE 1761435..1762073 (-) 639 WP_262561093.1 thiamine phosphate synthase -
  MUA21_RS08750 (MUA21_08720) thiM 1762076..1762855 (-) 780 WP_262562253.1 hydroxyethylthiazole kinase -
  MUA21_RS08755 (MUA21_08725) thiD 1762848..1763669 (-) 822 WP_107526316.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MUA21_RS08760 (MUA21_08730) tenA 1763662..1764351 (-) 690 WP_046207769.1 thiaminase II -
  MUA21_RS08765 (MUA21_08735) - 1764833..1765507 (-) 675 WP_075100255.1 transglycosylase family protein -
  MUA21_RS08770 (MUA21_08740) ssb 1765955..1766374 (-) 420 WP_073346080.1 single-stranded DNA-binding protein Machinery gene
  MUA21_RS08775 (MUA21_08745) - 1766564..1767004 (+) 441 WP_046207766.1 YwpF-like family protein -
  MUA21_RS08780 (MUA21_08750) fabZ 1767053..1767490 (-) 438 WP_046207765.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MUA21_RS08785 (MUA21_08755) murA 1767554..1768819 (-) 1266 WP_107525987.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MUA21_RS08790 (MUA21_08760) - 1768921..1769154 (-) 234 WP_046207763.1 DUF1146 family protein -
  MUA21_RS08795 (MUA21_08765) - 1769588..1769992 (-) 405 WP_019468303.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16096.49 Da        Isoelectric Point: 5.0104

>NTDB_id=673492 MUA21_RS08770 WP_073346080.1 1765955..1766374(-) (ssb) [Staphylococcus ureilyticus strain IVB6236]
MINSIVIVGRLTKDPKIYEKEGNKLATFCVAVPRNYKDKNQKVICDYLFCKAFGKIANNVEKYINQGSLVGITGQMQSRK
FEKEGQMHFVSEIFIETIKFMSPRSKNEDETLFDPLPIDQNPDLISQFDFEENEIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=673492 MUA21_RS08770 WP_073346080.1 1765955..1766374(-) (ssb) [Staphylococcus ureilyticus strain IVB6236]
ATGATTAACAGTATTGTCATTGTAGGGAGACTAACAAAGGACCCTAAAATTTATGAGAAGGAAGGTAATAAACTAGCTAC
ATTTTGCGTAGCCGTCCCAAGAAATTATAAAGATAAAAATCAAAAAGTTATTTGTGATTATTTATTTTGTAAGGCATTCG
GAAAAATTGCTAATAATGTCGAAAAATATATCAATCAAGGTTCATTGGTTGGTATAACTGGACAAATGCAATCGAGAAAA
TTTGAAAAAGAAGGACAGATGCATTTTGTATCAGAAATTTTTATTGAAACTATTAAATTTATGTCCCCACGTTCTAAAAA
TGAAGATGAAACACTTTTTGATCCACTTCCAATAGATCAAAACCCAGATCTTATAAGTCAATTTGATTTTGAAGAAAACG
AAATTTATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

68

89.928

0.612
  ssb Staphylococcus aureus MW2

67.2

89.928

0.604