Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MUA21_RS04675 Genome accession   NZ_CP094825
Coordinates   962446..963318 (+) Length   290 a.a.
NCBI ID   WP_192947687.1    Uniprot ID   -
Organism   Staphylococcus ureilyticus strain IVB6236     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 957446..968318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA21_RS04655 (MUA21_04640) ylqF 958378..959238 (+) 861 WP_046208649.1 ribosome biogenesis GTPase YlqF -
  MUA21_RS04660 (MUA21_04645) - 959248..960018 (+) 771 WP_262561973.1 ribonuclease HII -
  MUA21_RS04665 (MUA21_04650) sucC 960126..961292 (+) 1167 WP_107525978.1 ADP-forming succinate--CoA ligase subunit beta -
  MUA21_RS04670 (MUA21_04655) sucD 961314..962219 (+) 906 WP_046208646.1 succinate--CoA ligase subunit alpha -
  MUA21_RS04675 (MUA21_04660) dprA 962446..963318 (+) 873 WP_192947687.1 DNA-processing protein DprA Machinery gene
  MUA21_RS04680 (MUA21_04665) topA 963511..965577 (+) 2067 WP_107525976.1 type I DNA topoisomerase -
  MUA21_RS04685 (MUA21_04670) trmFO 965724..967031 (+) 1308 WP_262561974.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MUA21_RS04690 (MUA21_04675) xerC 967151..968041 (+) 891 WP_046208642.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33061.08 Da        Isoelectric Point: 9.7021

>NTDB_id=673474 MUA21_RS04675 WP_192947687.1 962446..963318(+) (dprA) [Staphylococcus ureilyticus strain IVB6236]
MNIDYLFLKLRFSGLSTQQIHRLLKYKNDFMFYNKHEQQAILQLYLSTIKSKKKDQIYQDFVNNPIDAILIQLHKWNINF
IGINHPSYPKLLREIHDPPLILFYKGDITLTTRDQTLAIVGSRHATRYTGDALKFLFPSFKKKDLTIVSGLAEGADQAAH
QHALDNQMSAIAVLGFGHLNHYPKSTQNIRNQLERTGLVISEYLPYQKPLKHHFPERNRLISGLSKGVLITESTIKSGTS
ITTNCALEQNREVYVLPGSMFNDMTMGNLISAQEGAKIVISAKDIIDDFN

Nucleotide


Download         Length: 873 bp        

>NTDB_id=673474 MUA21_RS04675 WP_192947687.1 962446..963318(+) (dprA) [Staphylococcus ureilyticus strain IVB6236]
ATGAACATAGATTATTTATTTTTAAAATTGCGTTTCTCAGGATTGTCCACACAGCAAATACATCGATTGCTGAAATATAA
GAATGATTTTATGTTTTACAATAAACACGAGCAGCAAGCAATATTACAACTATATTTATCAACAATTAAATCTAAAAAGA
AAGATCAAATATATCAAGATTTTGTAAACAATCCCATTGATGCCATTCTTATTCAATTACATAAATGGAACATTAATTTT
ATTGGTATTAACCATCCATCATATCCGAAATTGCTTCGCGAAATACATGATCCTCCACTTATACTTTTTTATAAAGGAGA
TATCACGTTAACAACGCGTGATCAAACCCTTGCAATCGTTGGATCTAGACATGCTACTCGATATACAGGGGATGCATTGA
AATTCCTTTTCCCTTCATTTAAAAAGAAAGATCTAACCATAGTCTCTGGATTAGCAGAAGGTGCAGACCAAGCAGCACAT
CAACATGCATTAGACAATCAAATGTCAGCGATTGCGGTGTTAGGATTTGGCCATCTTAATCATTATCCCAAATCAACGCA
AAATATTAGAAATCAACTTGAGCGCACTGGCTTAGTCATAAGTGAATATTTACCATATCAAAAGCCGCTTAAACATCATT
TTCCAGAAAGAAATAGATTAATTAGTGGTTTATCAAAAGGGGTTTTGATTACAGAATCTACAATTAAAAGTGGTACTTCT
ATTACGACTAATTGTGCATTAGAACAAAATAGAGAAGTATATGTTTTGCCAGGTTCGATGTTCAATGATATGACAATGGG
GAACTTAATAAGTGCGCAAGAAGGGGCGAAAATTGTTATATCTGCGAAAGACATCATAGATGATTTTAACTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

48

100

0.497
  dprA Staphylococcus aureus MW2

48

100

0.497