Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   MUA76_RS00220 Genome accession   NZ_CP094823
Coordinates   49132..50481 (-) Length   449 a.a.
NCBI ID   WP_262651033.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain IVB6217     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 44132..55481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA76_RS00195 (MUA76_00195) - 44848..45537 (-) 690 WP_262651028.1 replication initiation protein -
  MUA76_RS00200 (MUA76_00200) - 45739..46242 (-) 504 WP_262651029.1 DUF1643 domain-containing protein -
  MUA76_RS00205 (MUA76_00205) - 46263..46574 (-) 312 WP_262651030.1 DUF960 domain-containing protein -
  MUA76_RS00210 (MUA76_00210) - 46670..47008 (-) 339 WP_262651031.1 SAUGI family uracil-DNA glycosylase inhibitor -
  MUA76_RS00215 (MUA76_00215) ccrB 47482..49110 (-) 1629 WP_262651032.1 cassette chromosome recombinase CcrB Machinery gene
  MUA76_RS00220 (MUA76_00220) ccrA 49132..50481 (-) 1350 WP_262651033.1 cassette chromosome recombinase CcrA Machinery gene
  MUA76_RS00225 (MUA76_00225) cch1 50660..52444 (-) 1785 WP_262651034.1 cassette chromosome replicative helicase -
  MUA76_RS00230 (MUA76_00230) ssb 52444..52734 (-) 291 WP_107377044.1 cassette chromosome ssDNA-binding protein -
  MUA76_RS00235 (MUA76_00235) - 52876..53946 (+) 1071 WP_262651035.1 hypothetical protein -
  MUA76_RS00240 (MUA76_00240) - 53964..54482 (+) 519 WP_262651036.1 hypothetical protein -
  MUA76_RS00245 (MUA76_00245) - 54514..55188 (-) 675 WP_262651037.1 IS6-like element IS257 family transposase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52305.90 Da        Isoelectric Point: 9.9679

>NTDB_id=673401 MUA76_RS00220 WP_262651033.1 49132..50481(-) (ccrA) [Mammaliicoccus sciuri strain IVB6217]
MKQAIGYLRQSTTKQQSLTAQKQTIETLAKKYNIQHIIFYSDKQSGRTDNRTGYQQVIESIQQRQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSIHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGLKEKARQGKLITTHAPFGYTYR
NGTFTINQDEAPTVKTIFHYYLQGYGYKKIAQYLETDDKCINRKPYQVRAIITNPNYCGRVINQYGQYDNMFPSIVSTNI
YEQAQEIRSQKHTKRTPSDNQLQKKIKCPYCGSTLTNMTIRKKHHTLRYYVCPQNLNASRFVCAFKGINAQVLETSVLAT
CQNFFQNQQLYSKINQTIQQRFKRQRDIEAKHTLTQEQLIDKLAKGMIDAETFRNQSQSVLQKRKTISSISDTQLQTSLQ
KVIQKSFTLNMLYPYIDEIHITKNKELSGIYLKDEPLNIVNQAVQSSTV

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=673401 MUA76_RS00220 WP_262651033.1 49132..50481(-) (ccrA) [Mammaliicoccus sciuri strain IVB6217]
ATGAAACAAGCTATTGGTTATTTACGCCAAAGTACAACCAAGCAACAATCACTCACCGCACAGAAACAAACTATCGAAAC
GCTCGCTAAAAAATACAATATCCAACACATCATCTTTTATAGTGATAAGCAATCAGGCAGAACGGATAATCGAACTGGTT
ATCAACAAGTCATCGAAAGCATTCAACAAAGACAATGTGACGTATTATGTTGTTATCGCTTGAATCGACTGCATCGTAAT
TTGAAAAATGCATTAAAACTTATGAAACTGTGTCAAAAGTATCATGTTCATATTCTAAGTATTCATGATGGCTATTTTGA
TATGGATAAAGCGTTTGATCGCCTAAAACTTAATATATTCATAAGTCTCGCAGAATTAGAGTCCGATAATATTGGTGAAC
AAGTCAAGAATGGTCTTAAAGAAAAAGCTAGACAAGGTAAACTCATCACGACACATGCACCATTTGGTTATACCTATCGC
AATGGCACATTCACAATTAATCAAGATGAAGCACCAACGGTTAAGACAATATTCCATTACTACCTACAAGGCTATGGTTA
TAAGAAAATTGCGCAATACCTAGAAACAGATGATAAATGTATTAATCGTAAGCCCTACCAAGTACGCGCTATTATCACGA
ATCCTAATTATTGTGGTCGCGTTATCAATCAATATGGACAATATGATAACATGTTCCCATCTATTGTTTCGACCAATATA
TACGAACAAGCTCAAGAAATACGGTCACAAAAACATACAAAACGGACTCCCTCAGATAATCAACTTCAGAAGAAAATAAA
ATGTCCATATTGTGGATCAACCCTGACTAATATGACGATTAGAAAAAAGCACCATACCTTACGTTATTATGTCTGTCCTC
AAAATTTGAATGCATCACGTTTTGTCTGTGCATTCAAAGGAATCAATGCGCAAGTATTAGAAACAAGTGTCTTAGCGACT
TGTCAGAACTTCTTTCAGAACCAACAGCTCTATTCAAAAATCAACCAAACAATTCAACAACGATTCAAAAGACAAAGGGA
CATAGAAGCTAAACATACACTCACGCAAGAACAACTGATAGATAAACTTGCCAAAGGTATGATTGATGCTGAAACATTCA
GGAATCAGTCTCAGTCAGTGCTTCAAAAGCGCAAAACCATATCTTCAATAAGTGATACTCAGTTACAAACATCACTACAA
AAGGTTATACAGAAAAGTTTCACGTTAAACATGCTGTATCCCTATATTGATGAAATTCATATTACTAAAAATAAAGAACT
AAGCGGCATCTATTTAAAAGATGAGCCACTAAACATTGTTAATCAAGCGGTACAATCATCAACTGTCTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)

Recombinase (Recombinase)

(169-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

80.846

100

0.808
  ccrA Staphylococcus aureus N315

73.154

99.555

0.728