Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   MUA76_RS00215 Genome accession   NZ_CP094823
Coordinates   47482..49110 (-) Length   542 a.a.
NCBI ID   WP_262651032.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain IVB6217     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 42482..54110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA76_RS00195 (MUA76_00195) - 44848..45537 (-) 690 WP_262651028.1 replication initiation protein -
  MUA76_RS00200 (MUA76_00200) - 45739..46242 (-) 504 WP_262651029.1 DUF1643 domain-containing protein -
  MUA76_RS00205 (MUA76_00205) - 46263..46574 (-) 312 WP_262651030.1 DUF960 domain-containing protein -
  MUA76_RS00210 (MUA76_00210) - 46670..47008 (-) 339 WP_262651031.1 SAUGI family uracil-DNA glycosylase inhibitor -
  MUA76_RS00215 (MUA76_00215) ccrB 47482..49110 (-) 1629 WP_262651032.1 cassette chromosome recombinase CcrB Machinery gene
  MUA76_RS00220 (MUA76_00220) ccrA 49132..50481 (-) 1350 WP_262651033.1 cassette chromosome recombinase CcrA Machinery gene
  MUA76_RS00225 (MUA76_00225) cch1 50660..52444 (-) 1785 WP_262651034.1 cassette chromosome replicative helicase -
  MUA76_RS00230 (MUA76_00230) ssb 52444..52734 (-) 291 WP_107377044.1 cassette chromosome ssDNA-binding protein -
  MUA76_RS00235 (MUA76_00235) - 52876..53946 (+) 1071 WP_262651035.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62643.63 Da        Isoelectric Point: 9.6069

>NTDB_id=673400 MUA76_RS00215 WP_262651032.1 47482..49110(-) (ccrB) [Mammaliicoccus sciuri strain IVB6217]
MQQLKQKRVGIYVRVSTEMQSTEGYSIEGQINQIKEYCQFHHFEVTDIYADRGISGKSMNRPELQRMLHDANEGLIDCVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
IPLGYDKIPDNKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSINSITYILVNPFYIGKIQFAK
YKDWNEKRRKGLNDKPIIADGKHPPIISQELWDKVQSRKKQVSQKPQVHGKGPNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVINKVLERVNQENKVDIGALNHDIAYKQQQFD
EIQAKLNNLVKTIEDNPDLTSVLKETIHQYETQLNDITNQMNQLKQQQNQEKPSYDTKQIALLLQRIFQNIESMDKSHLK
ALYLTVIDRIDIRKDGNHKKQFFVTLKLNNEIIKQLFNNNSLDEVLLSTSSLFLPQTLFLQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=673400 MUA76_RS00215 WP_262651032.1 47482..49110(-) (ccrB) [Mammaliicoccus sciuri strain IVB6217]
ATGCAACAACTCAAACAAAAACGTGTCGGTATTTATGTCCGTGTATCCACTGAAATGCAAAGTACAGAAGGTTATAGTAT
TGAAGGTCAAATCAATCAAATTAAAGAATACTGTCAATTTCATCATTTTGAAGTCACAGATATTTACGCTGATCGTGGTA
TATCAGGAAAGTCTATGAACCGTCCTGAACTTCAACGTATGTTACATGATGCAAATGAAGGTCTCATCGATTGTGTCATG
GTATATAAAACAAATCGACTCGCACGTAATACATCAGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAACGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAAATACTTGCGAGCTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAACGTATTCATGGGACAAACCAGACGTGCTCAAGAAGGCTATTATCAAGGCAAT
ATTCCACTAGGATATGACAAAATACCTGATAATAAACACGAACTGATGATTAATCAACATGAAGCGAATATCGTGAAATA
TATATTCGAATCTTATGCCAAAGGACATGGTTATCGTAAAATTGCCAATGCCCTCAATCACAAAGGATATGTTACTAAAA
AAGGTAATCCTTTTAGCATCAATTCAATAACCTATATCTTAGTCAATCCATTCTACATTGGTAAAATTCAATTTGCGAAG
TATAAAGATTGGAATGAAAAGCGTCGTAAAGGACTGAATGATAAACCTATTATAGCTGATGGTAAACACCCTCCTATTAT
TAGTCAAGAATTATGGGATAAAGTCCAATCACGCAAAAAACAGGTCAGTCAAAAACCTCAAGTTCATGGTAAAGGACCCA
ATCTATTAACAGGTATTATTCACTGTCCACAATGCGGCGCACCTATGGCGGCAAGTAATACCACTAATACACTCAAAGAT
GGAACTAAGAAACGTATTCGCTATTATTCTTGTAGTAACTTCCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGCGT
TAGAGCTGATGTTATCGAAAAGTATGTTATGGATCAAATACTTGAAATAGTCAAAAGTGATAAAGTCATTAATAAAGTCT
TAGAACGTGTCAATCAAGAGAATAAAGTCGATATTGGTGCATTGAACCATGATATTGCTTATAAGCAACAACAATTTGAT
GAAATACAAGCTAAATTAAATAATTTGGTTAAAACTATTGAAGATAATCCAGACTTAACGTCCGTACTCAAAGAAACCAT
ACACCAATATGAAACGCAACTCAATGATATCACAAACCAAATGAATCAACTCAAGCAGCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTCTCCTATTACAACGAATATTTCAAAACATAGAATCCATGGATAAATCACATCTTAAA
GCATTATACCTTACGGTCATTGATCGTATCGATATTCGTAAAGATGGGAATCATAAAAAGCAATTCTTTGTCACACTCAA
GCTCAATAATGAAATTATTAAACAACTTTTCAATAATAACTCGCTCGACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTCAAACGCTCTTTCTTCAAATCTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

86.9

100

0.869