Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OH735_RS16280 Genome accession   NZ_CP109297
Coordinates   3478025..3479437 (+) Length   470 a.a.
NCBI ID   WP_406382261.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01618     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3473025..3484437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH735_RS16265 (OH735_16220) - 3473921..3474886 (-) 966 WP_406382258.1 Ppx/GppA family phosphatase -
  OH735_RS16270 (OH735_16225) - 3474927..3475769 (+) 843 WP_406382259.1 hypothetical protein -
  OH735_RS16275 (OH735_16230) - 3475875..3477785 (-) 1911 WP_406382260.1 BACON domain-containing protein -
  OH735_RS16280 (OH735_16235) radA/sms 3478025..3479437 (+) 1413 WP_406382261.1 DNA repair protein RadA Machinery gene
  OH735_RS16285 (OH735_16240) disA 3479518..3480642 (+) 1125 WP_406382262.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OH735_RS16290 (OH735_16245) - 3480809..3481609 (-) 801 WP_406382264.1 hypothetical protein -
  OH735_RS16295 (OH735_16250) - 3481805..3482488 (+) 684 WP_406382265.1 phosphatase PAP2 family protein -
  OH735_RS16300 (OH735_16255) - 3482642..3483544 (+) 903 WP_406382266.1 A/G-specific adenine glycosylase -
  OH735_RS16305 (OH735_16260) - 3483718..3484368 (+) 651 WP_406382267.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49450.53 Da        Isoelectric Point: 8.4875

>NTDB_id=673378 OH735_RS16280 WP_406382261.1 3478025..3479437(+) (radA/sms) [Streptomyces sp. NBC_01618]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTAEESASQVRLRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAYRLGFTHALVPTDPGKVPAGMKVTEVANMGDALSVLPRRSRAQAPREESARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=673378 OH735_RS16280 WP_406382261.1 3478025..3479437(+) (radA/sms) [Streptomyces sp. NBC_01618]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACAGAATGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTGCGGACCACCGCGGCCG
GCCGGGTCAGCACCGCCGCGCTCCCCATCGGCCAGGTCGACAGCCGGCAGGCCACCGCCCGGTCCACCGGCGTCGGTGAG
CTGGACCGGGTGCTCGGCGGCGGGCTCGTCCCCGGTGCCGTCGTGCTGCTCGCGGGCGAACCGGGCGTCGGGAAGTCGAC
GCTGCTGCTGGATGTCGCCGCCAAGGCGGCGAGCGACGACCACCGCACCCTCTACGTCACCGCCGAGGAGTCCGCGAGCC
AGGTGCGCCTGCGCGCCGACCGGATCCGGGCGATCAACGACCATCTGTATCTCGCCGCCGAGACGGACCTGTCCGCGGTC
CTCGGTCATCTGGACGCCGTCAAGCCGTCGCTCCTCATCCTCGACTCCGTACAGACCGTCGCCTCGCCCGAGATCGACGG
GGCCCCCGGCGGCATGGCACAGGTCCGGGAGGTCGCCGGCGCCCTCATCCGGGCCTCCAAGGAGCGCGGCATGTCGACGC
TCCTGGTCGGCCACGTCACGAAGGACGGGGCGATCGCCGGGCCGCGGCTGCTGGAGCATCTCGTCGATGTGGTGCTGTCC
TTCGAAGGCGACCGCCATGCCCGTCTGCGGCTCGTACGCGGCGTCAAGAACAGGTACGGCGCGACCGACGAGGTCGGCTG
TTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCGTCCGGGCTGTTCCTCACCCGGCGCGACGAACCGGTGC
CCGGCACCTGCCTGACCGTCACCCTGGAGGGCAAGCGGCCGCTCGTCGCCGAGGTGCAGGCGTTGACGGTCGACTCCCAG
ATCCCTTCCCCCCGGCGCACCACCTCGGGGCTGGAGACGTCCCGGGTGTCGATGATGCTGGCCGTTCTGGAACAGCGCGG
CCGGATCAGTTCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTCGGCGGAGTGAAGCTCTCCGAGCCCGCCGCGGACC
TCGCGGTCGCGCTGGCGCTGGCCAGCGCCGCCAGTGACACGCCTCTTCCCAAGAACCTGGTGGCGATCGGCGAAGTGGGC
CTCGCGGGCGAGGTCAGACGGGTTACGGGGGTCCAGCGCAGGCTGGCCGAGGCGTACCGTCTGGGCTTCACGCACGCGCT
GGTTCCGACCGACCCGGGAAAGGTCCCGGCCGGTATGAAGGTCACAGAAGTCGCCAACATGGGCGATGCTCTGAGCGTGC
TCCCGCGCCGGTCTCGCGCACAGGCCCCACGGGAGGAGAGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.584

96.17

0.419
  radA Streptococcus pneumoniae Rx1

44.289

91.277

0.404
  radA Streptococcus pneumoniae D39

44.289

91.277

0.404
  radA Streptococcus pneumoniae R6

44.289

91.277

0.404
  radA Streptococcus pneumoniae TIGR4

44.289

91.277

0.404
  radA Streptococcus mitis SK321

44.289

91.277

0.404
  radA Streptococcus mitis NCTC 12261

44.289

91.277

0.404