Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA42_RS13880 Genome accession   NZ_CP094819
Coordinates   2757575..2758102 (-) Length   175 a.a.
NCBI ID   WP_025906200.1    Uniprot ID   A0A1X0TQ72
Organism   Mammaliicoccus sciuri strain IVB6228     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2752575..2763102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA42_RS13850 (MUA42_13850) cstR 2753370..2753630 (+) 261 WP_019468539.1 persulfide-sensing transcriptional repressor CstR -
  MUA42_RS13855 (MUA42_13855) - 2753630..2754386 (+) 757 Protein_2693 sulfite exporter TauE/SafE family protein -
  MUA42_RS13860 (MUA42_13860) - 2754509..2755354 (-) 846 WP_262642191.1 DUF2785 domain-containing protein -
  MUA42_RS13865 (MUA42_13865) - 2755489..2756022 (+) 534 WP_262642192.1 hypothetical protein -
  MUA42_RS13870 (MUA42_13870) - 2756081..2757088 (+) 1008 WP_262642193.1 Abi family protein -
  MUA42_RS13875 (MUA42_13875) rpsR 2757273..2757515 (-) 243 WP_037589451.1 30S ribosomal protein S18 -
  MUA42_RS13880 (MUA42_13880) ssbA 2757575..2758102 (-) 528 WP_025906200.1 single-stranded DNA-binding protein Machinery gene
  MUA42_RS13885 (MUA42_13885) rpsF 2758130..2758423 (-) 294 WP_025906202.1 30S ribosomal protein S6 -
  MUA42_RS13890 (MUA42_13890) ychF 2758595..2759695 (-) 1101 WP_262644689.1 redox-regulated ATPase YchF -
  MUA42_RS13895 (MUA42_13895) - 2759699..2759896 (-) 198 WP_025906204.1 DUF951 domain-containing protein -
  MUA42_RS13900 (MUA42_13900) - 2759920..2760804 (-) 885 WP_262642195.1 mechanosensitive ion channel family protein -
  MUA42_RS13905 (MUA42_13905) - 2760816..2761652 (-) 837 WP_262642196.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19589.21 Da        Isoelectric Point: 4.7512

>NTDB_id=673306 MUA42_RS13880 WP_025906200.1 2757575..2758102(-) (ssbA) [Mammaliicoccus sciuri strain IVB6228]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTYTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQNNNEFQNYGQDFGGNQQQGQKAPSNQQSNNQQSSNPFA
NANGPIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=673306 MUA42_RS13880 WP_025906200.1 2757575..2758102(-) (ssbA) [Mammaliicoccus sciuri strain IVB6228]
ATGATTAATCGTGTTGTATTAGTCGGTCGATTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTATACGAATCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTTGTAT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTGGCAGGAGTTGAAGGTCGTCTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGACAGTGTTCAATTCCTTGAACCAAAAGG
CGCAAACCAACGTCAATCTGGTAATGATAATCAATCATATAACCAAAATAATAACGAATTCCAAAATTATGGACAAGACT
TTGGTGGTAACCAACAACAAGGACAAAAAGCACCTTCAAATCAACAGTCAAATAATCAACAATCAAGTAATCCATTTGCA
AACGCTAATGGCCCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X0TQ72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.222

100

0.64
  ssb Latilactobacillus sakei subsp. sakei 23K

52.514

100

0.537