Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG987_RS18120 Genome accession   NZ_CP109296
Coordinates   4048167..4049579 (+) Length   470 a.a.
NCBI ID   WP_354392007.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01620     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4043167..4054579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG987_RS18105 (OG987_18115) - 4044267..4045214 (-) 948 WP_329451630.1 Ppx/GppA phosphatase family protein -
  OG987_RS18110 (OG987_18120) - 4045255..4046124 (+) 870 WP_329451629.1 hypothetical protein -
  OG987_RS18115 (OG987_18125) - 4046157..4047926 (-) 1770 WP_406338657.1 BACON domain-containing protein -
  OG987_RS18120 (OG987_18130) radA/sms 4048167..4049579 (+) 1413 WP_354392007.1 DNA repair protein RadA Machinery gene
  OG987_RS18125 (OG987_18135) disA 4049660..4050784 (+) 1125 WP_313937906.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG987_RS18130 (OG987_18140) - 4050945..4051754 (-) 810 WP_388688845.1 hypothetical protein -
  OG987_RS18135 (OG987_18145) - 4052606..4053508 (+) 903 WP_313937908.1 A/G-specific adenine glycosylase -
  OG987_RS18140 (OG987_18150) - 4053684..4054334 (+) 651 WP_354392004.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49666.82 Da        Isoelectric Point: 8.2640

>NTDB_id=673300 OG987_RS18120 WP_354392007.1 4048167..4049579(+) (radA/sms) [Streptomyces sp. NBC_01620]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSSAALPIGQVDSRQATARPTGVDE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTAEESASQVRLRADRIRAINDHLFLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRVPPGMKVTEVANMGDALRVLPRRSRTEPPREADARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=673300 OG987_RS18120 WP_354392007.1 4048167..4049579(+) (radA/sms) [Streptomyces sp. NBC_01620]
ATGGCTGCCCGTACAAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGATGCCCCGAATGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCTGCCGTGCGGACAACAGCGGCCG
GCCGCGTCAGCTCGGCCGCACTCCCCATCGGCCAGGTCGACAGCCGGCAGGCCACCGCCCGGCCGACCGGGGTGGACGAG
CTGGACCGGGTGCTCGGCGGCGGGCTGGTCCCCGGCGCCGTGGTGCTGCTCGCGGGCGAGCCGGGTGTCGGAAAGTCGAC
GCTCCTGCTGGATGTGGCCGCCAAGGCAGCCAGCGACGAGCACCGCACCCTCTATGTCACCGCGGAGGAGTCCGCGAGCC
AGGTGCGGCTGCGCGCCGACCGGATCCGGGCGATCAACGACCACCTCTTCCTCGCGGCCGAGACCGACCTCTCCGCGGTC
CTCGGCCATCTGGACGCGGTCAAGCCGTCCCTGCTCATCCTCGACTCCGTGCAGACCGTCGCCTCGCCCGAGATCGAGGG
CGCACCCGGCGGGATGGCACAGGTCCGGGAGGTCGCCGGTGCGCTCATCCGCGCCTCCAAGGAGCGCGGCATGTCCACGC
TGCTGGTCGGCCATGTCACCAAGGACGGCGCGATCGCCGGGCCGCGGCTGCTGGAGCACCTCGTCGATGTGGTGCTGTCC
TTCGAGGGCGACCGGCATGCGCGCCTTCGACTGGTCCGGGGCGTGAAGAACCGGTACGGGGCGACCGACGAGGTCGGCTG
TTTCGAACTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGTCCGGCCTCTTCCTCACCCGGCGCGACGAACCCGTGC
CGGGCACCTGTCTGACGGTCACGCTGGAGGGGCGGCGCCCGCTCGTCGCCGAAGTGCAGGCGCTGACGGTCGACTCGCAG
ATCCCCTCACCGCGGCGCACCACCTCCGGCCTGGAGACGTCCCGGGTCTCGATGATGCTGGCCGTTCTGGAGCAGCGCGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCCACGGTCGGCGGCGTGAAGCTTTCCGAACCCGCCGCGGACC
TTGCGATCGCGCTTGCGCTGGCCAGTGCGGCGAGCGACACCCCGCTGCCGAAGAACCTGGTGGCGATCGGCGAGGTGGGC
CTCGCAGGCGAGGTCAGAAGGGTTACGGGGGTGCAGCGCAGACTGGCCGAGGCACACCGCCTGGGCTTCACCCACGCACT
GGTCCCGACCGACCCGGGGAGGGTTCCACCCGGTATGAAGGTCACGGAAGTCGCCAACATGGGCGACGCGCTGAGAGTGC
TCCCGCGCCGGTCTCGTACAGAGCCCCCACGGGAGGCCGACGCACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(82-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.383

0.417
  radA Streptococcus mitis NCTC 12261

42.605

96.383

0.411
  radA Streptococcus mitis SK321

42.605

96.383

0.411
  radA Streptococcus pneumoniae Rx1

42.163

96.383

0.406
  radA Streptococcus pneumoniae D39

42.163

96.383

0.406
  radA Streptococcus pneumoniae R6

42.163

96.383

0.406
  radA Streptococcus pneumoniae TIGR4

42.163

96.383

0.406