Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MUA42_RS11365 Genome accession   NZ_CP094819
Coordinates   2250138..2251109 (-) Length   323 a.a.
NCBI ID   WP_316963325.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain IVB6228     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2245138..2256109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA42_RS11340 (MUA42_11340) - 2245698..2246219 (+) 522 WP_262641791.1 GrpB family protein -
  MUA42_RS11345 (MUA42_11345) murB 2246289..2247206 (+) 918 WP_262641792.1 UDP-N-acetylmuramate dehydrogenase -
  MUA42_RS11350 (MUA42_11350) - 2247246..2248283 (-) 1038 WP_262641793.1 siderophore ABC transporter substrate-binding protein -
  MUA42_RS11355 (MUA42_11355) - 2248386..2249186 (-) 801 WP_262641795.1 ABC transporter ATP-binding protein -
  MUA42_RS11360 (MUA42_11360) - 2249183..2250148 (-) 966 WP_262641797.1 iron chelate uptake ABC transporter family permease subunit -
  MUA42_RS11365 (MUA42_11365) ceuB 2250138..2251109 (-) 972 WP_316963325.1 ABC transporter permease Machinery gene
  MUA42_RS11370 (MUA42_11370) - 2251236..2251652 (-) 417 WP_025905416.1 FixH family protein -
  MUA42_RS11375 (MUA42_11375) nrdF 2251803..2252774 (-) 972 WP_025905415.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  MUA42_RS11380 (MUA42_11380) nrdE 2252803..2254908 (-) 2106 WP_107576950.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  MUA42_RS11385 (MUA42_11385) nrdI 2254871..2255269 (-) 399 WP_037588716.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35458.94 Da        Isoelectric Point: 10.7243

>NTDB_id=673301 MUA42_RS11365 WP_316963325.1 2250138..2251109(-) (ceuB) [Mammaliicoccus sciuri strain IVB6228]
MGKFLMRLDVLIILLVIATFFSIFIGVSEVKPLHILNLTDEQKNILVSSRIPRTVSIIISGSSLAICGLIMQQLTRNKFV
SPTTAGTLDWARLGILISLIAFPEANILLKLLFATLLSLFGTMLFMQILRRIQFKDVIFIPLVGIMLGNIVSSFSSFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLILAFIFANQFTIAGMGKDFSVNLGLNYQKVVNIGLIIASIITALVV
VTVGMMPFLGLIIPNLVSIFRGDHLKNALPHTAVFGALFVMICDVIGRLIIFPYEITIGLTIGVIGSFIFIVLLMKGRSR
NAQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=673301 MUA42_RS11365 WP_316963325.1 2250138..2251109(-) (ceuB) [Mammaliicoccus sciuri strain IVB6228]
ATGGGAAAGTTTTTAATGCGTTTAGATGTTTTAATCATATTATTAGTAATTGCAACGTTCTTCTCTATTTTTATAGGTGT
TTCAGAAGTAAAACCTTTACATATATTAAATTTAACTGACGAACAGAAGAATATTTTAGTGTCGAGTAGAATTCCGAGAA
CAGTCAGTATTATTATTTCAGGGAGTTCATTAGCTATTTGTGGATTGATTATGCAACAGTTAACAAGAAATAAATTCGTT
TCCCCAACAACTGCAGGGACATTGGATTGGGCGAGATTAGGTATATTAATTTCTCTTATCGCGTTTCCAGAAGCCAATAT
ACTACTTAAATTATTATTTGCTACATTATTAAGCTTATTTGGAACAATGCTATTTATGCAAATTCTCCGTAGAATTCAAT
TTAAAGATGTTATTTTTATACCGTTAGTTGGTATCATGCTCGGAAACATTGTGTCGAGTTTTTCCTCTTTTGTTGCATTA
CGTACAAATGCTGTACAAAGTATTGGTAATTTTATGCAAGGTAATTTCTCAATTATTACAAGTGGTAGATATGAAATTCT
TTACATTAGTATACCGTTATTAATTTTAGCGTTTATATTTGCGAATCAATTTACGATTGCTGGTATGGGTAAAGATTTCA
GTGTGAATTTAGGACTTAATTATCAAAAAGTCGTCAATATCGGGCTTATCATTGCATCAATTATTACAGCACTTGTTGTT
GTAACAGTTGGTATGATGCCATTCTTAGGATTAATTATTCCTAACTTAGTTTCAATATTCAGAGGAGATCATTTGAAAAA
TGCATTGCCACATACAGCAGTATTTGGTGCATTGTTTGTGATGATTTGTGATGTCATTGGAAGATTAATTATATTCCCTT
ATGAAATTACAATTGGTTTAACAATAGGTGTTATTGGTAGTTTCATATTTATAGTATTACTGATGAAAGGACGTTCTAGA
AATGCTCAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.789

98.142

0.498