Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MUA27_RS06880 Genome accession   NZ_CP094817
Coordinates   1360997..1363387 (+) Length   796 a.a.
NCBI ID   WP_262674322.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain IVB6230     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1355997..1368387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA27_RS06860 (MUA27_06850) sal(A) 1356304..1357929 (+) 1626 WP_096791847.1 ABC-F type ribosomal protection protein Sal(A) -
  MUA27_RS06865 (MUA27_06855) - 1357989..1359137 (+) 1149 WP_065381228.1 cysteine desulfurase family protein -
  MUA27_RS06870 (MUA27_06860) mnmA 1359130..1360239 (+) 1110 WP_049318720.1 tRNA 2-thiouridine(34) synthase MnmA -
  MUA27_RS06875 (MUA27_06865) - 1360326..1360994 (+) 669 WP_058611664.1 tetratricopeptide repeat protein -
  MUA27_RS06880 (MUA27_06870) recD2 1360997..1363387 (+) 2391 WP_262674322.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MUA27_RS06885 (MUA27_06875) alaS 1363636..1366266 (+) 2631 WP_096791849.1 alanine--tRNA ligase -
  MUA27_RS06890 (MUA27_06880) - 1366334..1366603 (+) 270 WP_037588397.1 IreB family regulatory phosphoprotein -
  MUA27_RS06895 (MUA27_06885) ruvX 1366596..1367024 (+) 429 WP_025904238.1 Holliday junction resolvase RuvX -
  MUA27_RS06900 (MUA27_06890) - 1367044..1367349 (+) 306 WP_025904237.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90418.49 Da        Isoelectric Point: 4.6188

>NTDB_id=673228 MUA27_RS06880 WP_262674322.1 1360997..1363387(+) (recD2) [Mammaliicoccus sciuri strain IVB6230]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVIKVDVMDSNEDFDQEVTIVGYLPQIVEGETYLFKGKVTNHPKYGKQLQAE
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAETIVDKLGEDALQKIIDDPDVLKEIPKLNKQKRDTIAESIRENQAIEHIM
IKLNELGFGPKLAMAIYQFYKEETLNIIKQSPYRLVMDINGIGFQRADQIAEQVGISKDHHDRLVAGVSYFLDQQSLQNG
HTFLPVDILTNGAYELLNHNQPEVVNKDQINGVIIEMSEENKLIIENDNCFLPSLYYSEAKSVQIIHRLYQHQDELKEIE
KSDLQLHIGQIEDMNDVSYADGQKLALETAINHKMMLLTGGPGTGKTTVIRGICELYSEIHGVSLNYDDYQEGTDFPIVL
AAPTGRAAKRLSESTGLEARTIHRLIGWSKDTQPDDVLDNDIHAHLIILDEMSMVDTWLMYQFLRAVPDYAQIIFVGDED
QLPSVGPGQIFKDLIDSKVIPRVNLTEVYRQQEGSSIIDLAHKIKNGLPVSINEKHHDRSFIPCSSNQIATVVEKVVQGA
VNKGYNMQDIQVLAPIYRGPAGINKLNELLQDILNPKDEDTRFLQYGDIEYRENDKVLQLINRPDDNVFNGDIGVVTGVY
KAEENALGKDVVIVDYEGNDITYTKQDLSEITHAYCCSIHKSQGSEFPIVIMPIVRQYFRMLQKNILYTGLTRAKQSLVV
CGEEQAFNQGIQTLGHERMTSFDTKLKMYFDTDVESDTESETESIQTKHIILTEDNMFEIDPMINMNDKTPYDFMK

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=673228 MUA27_RS06880 WP_262674322.1 1360997..1363387(+) (recD2) [Mammaliicoccus sciuri strain IVB6230]
TTGGAAAACTTATCTTTATTTGATCTTTCACATGTAAAAGGTGAAGTTATTAGAATTCTTTTTCAAAACAGTGATAACTA
TTATACCGTTATTAAAGTCGATGTGATGGATTCAAATGAAGATTTTGATCAAGAAGTCACAATTGTTGGTTACTTACCTC
AAATAGTTGAAGGAGAAACGTACCTTTTCAAAGGTAAAGTAACAAACCATCCGAAATACGGTAAACAACTACAAGCTGAA
ACTTTTGAAAAAGAATTACCACAAACAAAACAAGGTGTTATTCATTACTTATCGAGTGATTTATTTAAAGGTATTGGTAA
GAAAACAGCAGAAACAATCGTGGACAAACTAGGTGAAGATGCACTTCAGAAAATTATAGATGACCCAGATGTCCTTAAAG
AAATACCTAAACTTAACAAGCAAAAAAGAGATACGATTGCAGAATCAATACGTGAGAATCAAGCCATTGAACATATTATG
ATTAAACTTAATGAACTTGGTTTCGGTCCGAAACTCGCGATGGCTATTTATCAATTTTATAAAGAAGAAACACTTAATAT
TATTAAACAATCTCCATATCGTTTGGTGATGGATATAAATGGTATAGGGTTTCAAAGAGCTGACCAAATAGCCGAACAAG
TTGGAATTTCTAAAGATCATCATGATCGACTTGTAGCAGGTGTCAGTTACTTTTTAGACCAGCAATCATTACAGAATGGT
CACACGTTTTTACCTGTTGATATATTGACCAATGGGGCATATGAATTGTTAAATCATAATCAACCCGAAGTTGTGAATAA
AGATCAGATTAATGGTGTCATTATAGAGATGAGTGAAGAAAATAAACTTATTATCGAAAATGATAATTGTTTTTTACCTT
CACTTTATTATTCAGAAGCGAAAAGTGTGCAAATTATTCATAGGCTTTATCAACATCAAGATGAACTTAAAGAAATTGAA
AAAAGTGATCTTCAATTACACATTGGTCAAATTGAAGATATGAATGATGTTTCATATGCAGATGGCCAAAAATTAGCGTT
AGAAACAGCCATTAATCATAAAATGATGCTTTTAACAGGTGGACCTGGAACAGGTAAGACGACAGTTATTCGAGGCATTT
GTGAGTTGTATTCTGAAATACACGGTGTGAGTTTAAATTATGATGATTACCAAGAAGGAACGGACTTTCCAATTGTATTA
GCAGCACCGACTGGACGTGCAGCCAAAAGACTAAGTGAATCTACTGGACTAGAAGCGAGGACGATTCATAGATTAATTGG
ATGGAGTAAAGATACACAACCTGATGATGTGTTAGATAATGACATACATGCCCATTTAATCATTCTAGATGAAATGTCTA
TGGTAGATACATGGTTGATGTATCAATTTTTAAGAGCAGTCCCTGATTATGCTCAAATCATATTTGTAGGTGACGAAGAT
CAATTACCATCAGTTGGTCCAGGTCAGATTTTTAAAGATTTAATTGATTCTAAAGTGATACCGAGAGTGAACTTAACAGA
AGTTTATAGACAACAAGAAGGATCATCCATCATAGATTTAGCGCATAAAATAAAAAATGGATTGCCTGTTTCTATTAATG
AAAAACATCACGACCGCTCATTTATTCCTTGCAGTAGTAATCAAATTGCGACAGTTGTAGAAAAGGTCGTACAAGGTGCT
GTTAATAAAGGATATAATATGCAAGATATTCAAGTGCTAGCTCCAATATACCGTGGACCAGCAGGTATTAATAAATTAAA
TGAATTATTGCAAGATATATTAAATCCGAAAGATGAAGATACAAGATTTCTTCAATATGGAGATATTGAATATCGTGAAA
ATGATAAAGTACTTCAACTTATTAATCGTCCAGATGATAATGTATTTAATGGTGATATTGGTGTAGTGACGGGTGTTTAT
AAAGCAGAAGAAAATGCACTTGGTAAAGATGTCGTCATTGTAGATTATGAAGGGAATGACATAACATACACTAAACAAGA
TTTATCAGAAATTACACATGCTTATTGTTGTTCAATTCATAAATCACAAGGGTCGGAATTCCCGATAGTCATCATGCCTA
TTGTCAGACAATACTTTAGAATGTTACAAAAAAACATTCTATATACCGGACTTACACGTGCGAAGCAGTCGCTTGTTGTG
TGCGGTGAAGAACAAGCCTTTAATCAAGGTATCCAAACGCTAGGTCATGAGAGAATGACATCGTTTGATACGAAATTAAA
AATGTATTTCGATACTGATGTTGAATCGGATACTGAGTCTGAAACAGAATCTATTCAAACGAAACATATTATTTTAACTG
AAGATAATATGTTTGAAATCGATCCGATGATTAATATGAATGATAAAACACCATATGATTTTATGAAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-644)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.751

100

0.503