Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OH768_RS29635 Genome accession   NZ_CP109293
Coordinates   6432847..6434256 (-) Length   469 a.a.
NCBI ID   WP_406458616.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01622     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6427847..6439256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH768_RS29610 (OH768_29555) - 6428118..6428777 (-) 660 WP_406458606.1 hypothetical protein -
  OH768_RS29615 (OH768_29560) - 6428765..6429304 (-) 540 WP_406458608.1 SigE family RNA polymerase sigma factor -
  OH768_RS29620 (OH768_29565) - 6429604..6430524 (-) 921 WP_406458610.1 A/G-specific adenine glycosylase -
  OH768_RS29625 (OH768_29570) - 6430808..6431623 (+) 816 WP_406458612.1 hypothetical protein -
  OH768_RS29630 (OH768_29575) disA 6431640..6432764 (-) 1125 WP_406458614.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OH768_RS29635 (OH768_29580) radA/sms 6432847..6434256 (-) 1410 WP_406458616.1 DNA repair protein RadA Machinery gene
  OH768_RS29640 (OH768_29585) - 6434454..6436154 (+) 1701 WP_406458618.1 BACON domain-containing protein -
  OH768_RS29645 (OH768_29590) - 6436159..6437025 (-) 867 WP_406458620.1 hypothetical protein -
  OH768_RS29650 (OH768_29595) - 6437109..6438041 (+) 933 WP_406458622.1 Ppx/GppA family phosphatase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49657.83 Da        Isoelectric Point: 8.0038

>NTDB_id=673228 OH768_RS29635 WP_406458616.1 6432847..6434256(-) (radA/sms) [Streptomyces sp. NBC_01622]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCSECQAWGTVEEFGAPAVRTTAPGRVTTSALPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHRTLYITGEESASQVRLRADRIKAIDDHLYLAAETDLATIL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERAMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGKIPPGMKVLEVADIGDALQVLPRSRKREAPRDGEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=673228 OH768_RS29635 WP_406458616.1 6432847..6434256(-) (radA/sms) [Streptomyces sp. NBC_01622]
ATGGCTGCCCGTACGAAGACCACCAAGGACCGTCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCTCCGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTTCGGCGCGCCCGCCGTCCGTACGACAGCCCCGGGCC
GCGTCACCACCTCCGCGCTGCCCATCGGCCAGGTCGACGGCCGCCAGGCCACCGCCCGCTCGACCGGTGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGCCTGGTCCCCGGAGCGGTCGTCCTGGTCGCGGGCGAGCCCGGCGTCGGCAAGTCGACCCT
CCTCCTGGACGTGGCGGCCAAGGCGGCGAGCGACGAGCACCGCACGCTCTACATCACCGGCGAAGAATCAGCGAGCCAGG
TCCGCCTGCGCGCCGACCGCATCAAAGCGATCGACGACCACCTCTACCTCGCCGCCGAGACCGATCTGGCCACGATCCTC
GGCCACTTGGACGCGGTGAAGCCCTCCCTCCTGATCCTGGACTCCGTCCAGACGGTGGCCTCCCCGGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTCCGCGAGGTGGCCGGCGCCCTGATCCGCGCCTCCAAGGAGCGCGCCATGTCCACCCTCC
TGGTGGGCCACGTCACCAAGGACGGCGCGATCGCGGGCCCCCGCCTCCTGGAACACCTGGTGGACGTCGTCCTGTCCTTC
GAGGGCGACCGCCACGCCCGCCTGCGCCTCGTACGGGGCGTCAAGAACCGCTACGGCACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTGGCCGACCCTAGCGGCCTGTTCCTGACCCGCCGTGCGGAACCGGTCCCCG
GCACCTGCCTGACCGTCACCCTGGAAGGCCGCCGCCCCCTGGTGGCCGAAGTCCAGGCGCTCACGGTCGACTCCCAGATC
CCCTCCCCCCGCCGCACGACCTCGGGCCTGGAAACCTCCCGAGTCTCGATGATGCTCGCGGTCCTGGAACAACGCGGCCG
AATCAGCGCTCTAGGCAAAAGGGACATCTACTCCGCAACCGTAGGCGGAGTAAAACTCTCCGAACCGGCAGCAGATCTAG
CCATCGCTCTGGCCCTGGCCTCCGCGGCGAGCGACACCCCCCTCCCCAAGAACCTGGTCGCGATCGGCGAAGTAGGCCTC
GCGGGCGAGGTCAGAAGGGTCACGGGCGTCCAGCGCAGACTCTCCGAAGCACACCGTCTGGGCTTCACCCACGCCCTCGT
TCCGAGCGACCCGGGCAAGATCCCGCCCGGCATGAAGGTCCTCGAAGTGGCCGACATAGGAGACGCCCTCCAGGTCCTTC
CACGCTCCCGTAAACGAGAGGCCCCACGGGACGGCGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.142

96.375

0.416
  radA Streptococcus mitis NCTC 12261

42.762

95.736

0.409
  radA Streptococcus mitis SK321

42.762

95.736

0.409
  radA Streptococcus pneumoniae TIGR4

42.316

95.736

0.405
  radA Streptococcus pneumoniae D39

42.316

95.736

0.405
  radA Streptococcus pneumoniae Rx1

42.316

95.736

0.405
  radA Streptococcus pneumoniae R6

42.316

95.736

0.405