Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OHB56_RS23830 Genome accession   NZ_CP109277
Coordinates   5104606..5106015 (-) Length   469 a.a.
NCBI ID   WP_326754064.1    Uniprot ID   A0ABZ1GPJ2
Organism   Streptomyces sp. NBC_01635     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5099606..5111015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB56_RS23810 (OHB56_23760) - 5100101..5100640 (-) 540 WP_326754060.1 SigE family RNA polymerase sigma factor -
  OHB56_RS23815 (OHB56_23765) - 5101021..5101956 (-) 936 WP_406355544.1 A/G-specific adenine glycosylase -
  OHB56_RS23820 (OHB56_23770) - 5102296..5103144 (+) 849 WP_326754062.1 hypothetical protein -
  OHB56_RS23825 (OHB56_23775) disA 5103239..5104363 (-) 1125 WP_326754063.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHB56_RS23830 (OHB56_23780) radA 5104606..5106015 (-) 1410 WP_326754064.1 DNA repair protein RadA Machinery gene
  OHB56_RS23835 (OHB56_23785) - 5106212..5108062 (+) 1851 WP_326754065.1 BACON domain-containing protein -
  OHB56_RS23840 (OHB56_23790) - 5108150..5108995 (-) 846 WP_326754066.1 hypothetical protein -
  OHB56_RS23845 (OHB56_23795) - 5109091..5110023 (+) 933 WP_326754067.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49720.75 Da        Isoelectric Point: 7.7382

>NTDB_id=673118 OHB56_RS23830 WP_326754064.1 5104606..5106015(-) (radA) [Streptomyces sp. NBC_01635]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGVPAVRTTAPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIHAIDDHLYLAAETDLSAVL
GHLDAVKPSLLILDSVQTIASPELDGAPGGVAQVREVAGALIRASKERGMATLLVGHVTKDGSIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVRLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPGDPGKIPSGMKVLEVADIGDALRVLPRSRRRDAPRDEEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=673118 OHB56_RS23830 WP_326754064.1 5104606..5106015(-) (radA) [Streptomyces sp. NBC_01635]
ATGGCTGCCCGTACCAAAACCGCCAAGGACCGACCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCGTGCCCGCGGTCCGTACGACGGCTCCGGGGC
GGGTCACCACCTCCGCCGTGCCCATCGGCCAGGTCGACGGCCGTCAGGCCACGGCCCGCTCCACCGGTGTTCCCGAGCTG
GACCGGGTGCTCGGCGGCGGGCTCGTCCCCGGCGCGGTGGTGCTCGTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACGCT
CCTGCTGGACGTCGCGGCCAAGTCGGCGAGCGACGAGCACCGCACGCTCTATGTCACGGGCGAGGAGTCGGCGAGCCAGG
TCCGGCTGCGTGCCGACCGGATCCACGCCATCGACGACCACCTGTACCTCGCCGCCGAGACGGATCTGTCCGCCGTCCTC
GGCCATCTGGACGCGGTGAAGCCGTCCCTGCTGATCCTCGACTCGGTGCAGACGATCGCCTCCCCGGAACTCGACGGCGC
GCCGGGCGGCGTGGCCCAGGTGCGCGAGGTGGCGGGCGCGCTGATCCGCGCCTCCAAGGAGCGCGGGATGGCCACGCTGC
TGGTGGGCCATGTCACCAAGGACGGCTCGATCGCGGGGCCGCGCCTGCTGGAGCACCTGGTGGACGTCGTCCTGAGCTTC
GAGGGCGACCGGCACGCGCGGCTGCGCCTGGTCCGGGGCGTGAAGAACCGCTACGGCACCACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTGGCCGACCCCAGCGGGCTGTTCCTGACCCGCCGTGCGGAGCCGGTGCCGG
GCACCTGTCTGACGGTGACGCTGGAGGGCCGCCGCCCGCTGGTCGCCGAGGTGCAGGCGCTCACCGTCGACTCGCAGATC
CCCTCCCCCCGCCGCACCACCTCCGGGCTGGAGACCTCGCGTGTCTCGATGATGCTCGCGGTGCTGGAACAGCGCGGGCG
CATCAGCGCCTTGGGCAAGCGGGACATCTACTCCGCGACGGTCGGCGGGGTGCGGCTCTCCGAGCCGGCGGCGGATCTGG
CGATCGCGCTCGCCCTCGCGTCGGCGGCGAGCGACACCCCGTTGCCCAAGAACCTGGTCGCGATCGGCGAGGTCGGGCTC
GCGGGTGAGGTCAGGCGGGTGACGGGGGTACAGCGCCGGCTTTCCGAAGCGCACCGCCTGGGTTTCACGCACGCGCTCGT
GCCGGGCGATCCGGGCAAAATCCCGTCAGGAATGAAGGTTCTGGAAGTCGCGGACATAGGGGACGCCCTGCGTGTCCTTC
CGCGCTCGCGTCGCCGGGACGCCCCCCGGGACGAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(370-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

43.267

96.588

0.418
  radA Streptococcus mitis SK321

43.267

96.588

0.418
  radA Streptococcus pneumoniae R6

43.333

95.949

0.416
  radA Streptococcus pneumoniae Rx1

43.333

95.949

0.416
  radA Streptococcus pneumoniae TIGR4

43.333

95.949

0.416
  radA Streptococcus pneumoniae D39

43.333

95.949

0.416
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.605

96.588

0.412