Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MUA43_RS07515 Genome accession   NZ_CP094812
Coordinates   1545926..1546807 (-) Length   293 a.a.
NCBI ID   WP_262608206.1    Uniprot ID   -
Organism   Staphylococcus agnetis strain IVB6186     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1500930..1568799 1545926..1546807 within 0


Gene organization within MGE regions


Location: 1500930..1568799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA43_RS07325 (MUA43_07310) - 1501116..1502261 (-) 1146 WP_060550929.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  MUA43_RS07330 (MUA43_07315) pgsA 1502361..1502945 (-) 585 WP_037564617.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MUA43_RS07335 (MUA43_07320) - 1502989..1503384 (-) 396 WP_060550928.1 RodZ family helix-turn-helix domain-containing protein -
  MUA43_RS07340 (MUA43_07325) - 1503397..1504269 (-) 873 WP_060550927.1 DUF3388 domain-containing protein -
  MUA43_RS07345 (MUA43_07330) ymfI 1504321..1505025 (-) 705 WP_060550926.1 elongation factor P 5-aminopentanone reductase -
  MUA43_RS07350 (MUA43_07335) yfmH 1505028..1506311 (-) 1284 WP_060550925.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  MUA43_RS07355 (MUA43_07340) yfmF 1506292..1507578 (-) 1287 WP_060550924.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  MUA43_RS07360 (MUA43_07345) - 1507609..1508325 (-) 717 WP_060550923.1 GntR family transcriptional regulator -
  MUA43_RS07365 (MUA43_07350) - 1508328..1510676 (-) 2349 WP_060550922.1 DNA translocase FtsK -
  MUA43_RS07370 (MUA43_07355) rnjB 1510876..1512549 (-) 1674 WP_037564634.1 ribonuclease J2 -
  MUA43_RS07375 (MUA43_07360) - 1512984..1514300 (-) 1317 WP_060550921.1 neutral metalloprotease -
  MUA43_RS07380 (MUA43_07365) pnp 1514670..1516772 (-) 2103 WP_262608200.1 polyribonucleotide nucleotidyltransferase -
  MUA43_RS07385 (MUA43_07370) rpsO 1516941..1517210 (-) 270 WP_037564639.1 30S ribosomal protein S15 -
  MUA43_RS07390 (MUA43_07375) - 1517314..1518285 (-) 972 WP_060550919.1 bifunctional riboflavin kinase/FAD synthetase -
  MUA43_RS07395 (MUA43_07380) truB 1518300..1519217 (-) 918 WP_262608201.1 tRNA pseudouridine(55) synthase TruB -
  MUA43_RS07400 (MUA43_07385) rbfA 1519291..1519635 (-) 345 WP_037564645.1 30S ribosome-binding factor RbfA -
  MUA43_RS07405 (MUA43_07390) - 1519733..1520116 (-) 384 WP_060550917.1 VOC family protein -
  MUA43_RS07410 (MUA43_07395) infB 1520314..1522446 (-) 2133 WP_060550916.1 translation initiation factor IF-2 -
  MUA43_RS07415 (MUA43_07400) - 1522463..1522765 (-) 303 WP_060550915.1 YlxQ family RNA-binding protein -
  MUA43_RS07420 (MUA43_07405) rnpM 1522762..1523049 (-) 288 WP_037564655.1 RNase P modulator RnpM -
  MUA43_RS07425 (MUA43_07410) nusA 1523207..1524239 (-) 1033 Protein_1428 transcription termination factor NusA -
  MUA43_RS07430 (MUA43_07415) rimP 1524259..1524726 (-) 468 WP_060550914.1 ribosome maturation factor RimP -
  MUA43_RS07435 (MUA43_07420) - 1524854..1529164 (-) 4311 WP_262608203.1 PolC-type DNA polymerase III -
  MUA43_RS07440 (MUA43_07425) - 1529363..1531069 (-) 1707 WP_107368342.1 proline--tRNA ligase -
  MUA43_RS07445 (MUA43_07430) rseP 1531098..1532378 (-) 1281 WP_262608204.1 RIP metalloprotease RseP -
  MUA43_RS07450 (MUA43_07435) - 1532385..1533515 (-) 1131 WP_262608205.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  MUA43_RS07455 (MUA43_07440) - 1533531..1534310 (-) 780 WP_085622311.1 phosphatidate cytidylyltransferase -
  MUA43_RS07460 (MUA43_07445) - 1534324..1535085 (-) 762 WP_037564674.1 isoprenyl transferase -
  MUA43_RS07465 (MUA43_07450) frr 1535235..1535789 (-) 555 WP_037564677.1 ribosome recycling factor -
  MUA43_RS07470 (MUA43_07455) pyrH 1535808..1536530 (-) 723 WP_037564679.1 UMP kinase -
  MUA43_RS07475 (MUA43_07460) tsf 1536684..1537565 (-) 882 WP_171509145.1 translation elongation factor Ts -
  MUA43_RS07480 (MUA43_07465) rpsB 1537736..1538512 (-) 777 WP_037564683.1 30S ribosomal protein S2 -
  MUA43_RS07485 (MUA43_07470) codY 1538674..1539447 (-) 774 WP_060550908.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  MUA43_RS07490 (MUA43_07475) hslU 1539462..1540871 (-) 1410 WP_037564687.1 ATP-dependent protease ATPase subunit HslU -
  MUA43_RS07495 (MUA43_07480) hslV 1540888..1541430 (-) 543 WP_060550906.1 ATP-dependent protease subunit HslV -
  MUA43_RS07500 (MUA43_07485) xerC 1541434..1542324 (-) 891 WP_060550905.1 tyrosine recombinase XerC -
  MUA43_RS07505 (MUA43_07490) trmFO 1542445..1543749 (-) 1305 WP_105995826.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MUA43_RS07510 (MUA43_07495) topA 1543762..1545831 (-) 2070 WP_060550903.1 type I DNA topoisomerase -
  MUA43_RS07515 (MUA43_07500) dprA 1545926..1546807 (-) 882 WP_262608206.1 DNA-processing protein DprA Machinery gene
  MUA43_RS07520 (MUA43_07505) sucD 1547020..1547928 (-) 909 WP_060550901.1 succinate--CoA ligase subunit alpha -
  MUA43_RS07525 (MUA43_07510) sucC 1547950..1549116 (-) 1167 WP_037564702.1 ADP-forming succinate--CoA ligase subunit beta -
  MUA43_RS07530 (MUA43_07515) - 1549328..1549597 (-) 270 WP_037564707.1 hypothetical protein -
  MUA43_RS07535 (MUA43_07520) - 1549684..1550460 (-) 777 WP_145052003.1 ribonuclease HII -
  MUA43_RS07540 (MUA43_07525) ylqF 1550450..1551331 (-) 882 WP_060552473.1 ribosome biogenesis GTPase YlqF -
  MUA43_RS07545 (MUA43_07530) - 1551560..1551922 (+) 363 WP_105995858.1 GtrA family protein -
  MUA43_RS07550 (MUA43_07535) - 1551950..1554544 (+) 2595 WP_394371706.1 YfhO family protein -
  MUA43_RS07555 (MUA43_07540) - 1554541..1557135 (+) 2595 WP_262608209.1 YfhO family protein -
  MUA43_RS07560 (MUA43_07545) - 1557208..1558194 (-) 987 WP_262608210.1 prealbumin-like fold domain-containing protein -
  MUA43_RS12230 - 1558258..1558581 (-) 324 Protein_1456 collagen binding domain-containing protein -
  MUA43_RS07565 (MUA43_07550) - 1558560..1559144 (-) 585 WP_107368505.1 Ig-like domain-containing protein -
  MUA43_RS07570 (MUA43_07555) - 1559285..1559968 (-) 684 WP_107368506.1 phosphatase PAP2 family protein -
  MUA43_RS07575 (MUA43_07560) rplS 1560253..1560603 (-) 351 WP_037564712.1 50S ribosomal protein L19 -
  MUA43_RS07580 (MUA43_07565) trmD 1560708..1561442 (-) 735 WP_060550894.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  MUA43_RS07585 (MUA43_07570) rimM 1561439..1561942 (-) 504 WP_262608214.1 ribosome maturation factor RimM -
  MUA43_RS07590 (MUA43_07575) rpsP 1562047..1562322 (-) 276 WP_037564718.1 30S ribosomal protein S16 -
  MUA43_RS07595 (MUA43_07580) ffh 1562547..1563914 (-) 1368 WP_103346153.1 signal recognition particle protein -
  MUA43_RS07600 (MUA43_07585) - 1563928..1564260 (-) 333 WP_037564722.1 putative DNA-binding protein -
  MUA43_RS07605 (MUA43_07590) ftsY 1564247..1565578 (-) 1332 WP_060550891.1 signal recognition particle-docking protein FtsY -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33231.76 Da        Isoelectric Point: 9.5946

>NTDB_id=673084 MUA43_RS07515 WP_262608206.1 1545926..1546807(-) (dprA) [Staphylococcus agnetis strain IVB6186]
MLLENLIKLRYAGFTTQQLYRIFKRPIDVLSSDIIPILHQYITHQSPSSLRLKLQTFHILSASDILQQLRHDNIFPITIL
DEQFPTLLKEIYQPPLLLFCKGDLTHVTISKYKLGIVGARDCTLYSEKAVNYLLHEMRHAPLIIVSGLAKGTDALAHDYA
LKYSLPTIGVLGFGHHYHYPSVTKSLRHTIEMNRRGLTISEYPPMTPPAKFRFPERNRIISGLSHGVLVTEAKEKSGALI
TLDQALEHNRNVYVLPGDMFNKHTKGNMMRIKEGAEIVLSAADILKDLNTSIQ

Nucleotide


Download         Length: 882 bp        

>NTDB_id=673084 MUA43_RS07515 WP_262608206.1 1545926..1546807(-) (dprA) [Staphylococcus agnetis strain IVB6186]
GTGCTATTAGAAAATTTAATCAAATTGCGATATGCAGGTTTCACGACACAGCAACTTTATCGCATTTTTAAGCGACCTAT
TGACGTTTTGTCATCAGACATCATACCTATTTTGCATCAATATATTACGCACCAAAGTCCTTCTTCGTTACGATTAAAAC
TCCAAACATTTCATATATTAAGTGCTTCTGATATTTTACAACAACTTCGTCACGACAACATTTTTCCAATCACCATATTA
GATGAGCAATTCCCAACACTTTTAAAAGAAATTTACCAACCGCCACTTTTATTATTTTGTAAAGGCGACCTGACACACGT
TACCATTTCTAAGTACAAACTCGGCATAGTGGGTGCACGTGACTGTACGCTTTATAGCGAAAAAGCTGTCAATTATCTTC
TTCATGAGATGAGACACGCACCTTTAATCATTGTATCTGGTCTTGCGAAAGGAACAGATGCACTTGCGCATGATTATGCG
CTCAAATATTCATTACCTACAATAGGTGTGTTAGGGTTTGGGCATCATTATCATTATCCTTCAGTAACAAAATCACTTCG
ACACACAATTGAAATGAACCGACGAGGATTAACTATTAGTGAATATCCTCCTATGACGCCACCCGCAAAATTCCGTTTTC
CTGAACGTAATCGTATAATCAGTGGTCTGAGCCATGGCGTTCTAGTTACAGAAGCAAAAGAGAAAAGTGGTGCACTTATC
ACGTTAGATCAAGCATTAGAACATAATCGAAATGTGTATGTACTCCCTGGAGATATGTTTAATAAACACACAAAAGGTAA
TATGATGCGTATTAAGGAAGGTGCTGAAATTGTACTTTCAGCAGCAGATATTTTGAAAGATTTGAATACGTCAATTCAGT
GA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(70-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.877

97.27

0.495
  dprA Staphylococcus aureus N315

50.877

97.27

0.495