Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHB03_RS19165 Genome accession   NZ_CP109266
Coordinates   4278253..4279665 (+) Length   470 a.a.
NCBI ID   WP_326604438.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01643     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4273253..4284665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB03_RS19150 (OHB03_19175) - 4274340..4275287 (-) 948 WP_330245145.1 Ppx/GppA phosphatase family protein -
  OHB03_RS19155 (OHB03_19180) - 4275328..4276197 (+) 870 WP_267004539.1 hypothetical protein -
  OHB03_RS19160 (OHB03_19185) - 4276229..4278013 (-) 1785 WP_406406256.1 BACON domain-containing protein -
  OHB03_RS19165 (OHB03_19190) radA/sms 4278253..4279665 (+) 1413 WP_326604438.1 DNA repair protein RadA Machinery gene
  OHB03_RS19170 (OHB03_19195) disA 4279746..4280870 (+) 1125 WP_030972387.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHB03_RS19175 (OHB03_19200) - 4281025..4281762 (-) 738 WP_406406258.1 hypothetical protein -
  OHB03_RS19180 (OHB03_19205) - 4282688..4283590 (+) 903 WP_326629355.1 A/G-specific adenine glycosylase -
  OHB03_RS19185 (OHB03_19210) - 4283766..4284416 (+) 651 WP_330245149.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49632.72 Da        Isoelectric Point: 8.2605

>NTDB_id=672948 OHB03_RS19165 WP_326604438.1 4278253..4279665(+) (radA/sms) [Streptomyces sp. NBC_01643]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSSAALPIGQVDSRQATARPTGVDE
LDRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHRTLYVTAEESASQVRLRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRVPSGMKVTEVANMGDALRVLPRRSRTEAPREADARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=672948 OHB03_RS19165 WP_326604438.1 4278253..4279665(+) (radA/sms) [Streptomyces sp. NBC_01643]
ATGGCTGCCCGTACAAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGATGCCCCGAATGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCTGCCGTGCGGACGACGGCGGCCG
GCCGCGTCAGCTCGGCCGCACTCCCCATCGGCCAGGTCGACAGCCGGCAGGCCACCGCCCGGCCGACCGGGGTCGACGAG
CTGGACCGGGTGCTCGGCGGCGGGCTGGTCCCCGGCGCCGTGGTGCTGGTCGCGGGCGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCCGCCAAGGCCGCCAGCGACGAGCACCGCACGCTCTATGTCACCGCGGAGGAGTCCGCGAGCC
AGGTGCGGCTGCGCGCCGACCGGATCCGGGCGATCAACGACCACCTCTACCTCGCCGCCGAGACCGACCTCTCCGCGGTC
CTCGGCCATCTGGACGCGGTCAAGCCGTCCCTGCTCATCCTCGACTCCGTGCAGACCGTCGCCTCGCCAGAGATCGAGGG
CGCACCCGGCGGGATGGCGCAGGTCCGGGAGGTAGCCGGTGCGCTCATCCGCGCCTCCAAGGAGCGCGGCATGTCCACGC
TGCTGGTCGGCCATGTCACCAAGGACGGCGCGATCGCCGGGCCACGGCTGCTGGAGCACCTCGTCGATGTGGTGCTGTCC
TTCGAGGGCGACCGGCATGCACGCCTCCGGCTGGTCCGGGGCGTGAAGAACCGGTACGGGGCGACCGACGAGGTCGGCTG
TTTCGAACTGCACGACGAGGGCATCACGGGCCTCGCCGACCCGTCCGGCCTCTTCCTCACCCGGCGCGACGAGCCCGTGC
CGGGCACCTGTCTGACGGTCACGCTGGAGGGGCGGCGCCCGCTCGTCGCCGAAGTGCAGGCGCTGACGGTCGATTCGCAG
ATCCCCTCCCCGCGGCGCACCACCTCCGGTCTGGAGACGTCCCGGGTCTCGATGATGCTGGCGGTTCTGGAGCAGCGCGG
CCGGATCAGCGCACTCGGCAAGCGGGACATCTACAGCGCCACGGTCGGCGGCGTGAAGCTTTCCGAACCCGCCGCGGACC
TTGCGATCGCGCTTGCGCTGGCCAGCGCGGCAAGCGACACACCGCTGCCCAAGAACCTGGTGGCGATCGGCGAGGTGGGC
CTCGCGGGCGAGGTCAGAAGGGTCACGGGGGTGCAGCGGAGACTGGCCGAAGCACACCGTCTGGGCTTCACCCACGCGCT
GGTCCCGACCGACCCGGGGAGGGTTCCATCCGGTATGAAGGTCACGGAAGTCGCCAACATGGGCGACGCGCTCAGAGTGC
TCCCGCGCCGGTCTCGTACAGAGGCCCCACGGGAGGCCGACGCACGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

AAA domain (AAA_25)

(82-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.383

0.417
  radA Streptococcus pneumoniae Rx1

42.384

96.383

0.409
  radA Streptococcus pneumoniae D39

42.384

96.383

0.409
  radA Streptococcus pneumoniae R6

42.384

96.383

0.409
  radA Streptococcus pneumoniae TIGR4

42.384

96.383

0.409
  radA Streptococcus mitis SK321

43.823

91.277

0.4
  radA Streptococcus mitis NCTC 12261

43.823

91.277

0.4