Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MUA38_RS10765 Genome accession   NZ_CP094800
Coordinates   2165601..2165996 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6158     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2160601..2170996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA38_RS10740 (MUA38_10720) thiE 2161199..2161840 (-) 642 WP_000483158.1 thiamine phosphate synthase -
  MUA38_RS10745 (MUA38_10725) thiM 2161845..2162633 (-) 789 WP_262633482.1 hydroxyethylthiazole kinase -
  MUA38_RS10750 (MUA38_10730) thiD 2162617..2163447 (-) 831 WP_000594955.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MUA38_RS10755 (MUA38_10735) tenA 2163440..2164129 (-) 690 WP_000396067.1 thiaminase II -
  MUA38_RS10760 (MUA38_10740) sceD 2164516..2165211 (-) 696 WP_000752002.1 lytic transglycosylase SceD -
  MUA38_RS10765 (MUA38_10745) ssb 2165601..2165996 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  MUA38_RS10770 (MUA38_10750) - 2166190..2166630 (+) 441 WP_000846746.1 YwpF-like family protein -
  MUA38_RS10775 (MUA38_10755) fabZ 2166687..2167127 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MUA38_RS10780 (MUA38_10760) murA 2167161..2168426 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MUA38_RS10785 (MUA38_10765) - 2168537..2168770 (-) 234 WP_000384523.1 DUF1146 family protein -
  MUA38_RS10790 (MUA38_10770) - 2168902..2168995 (-) 94 Protein_2089 hypothetical protein -
  MUA38_RS10795 (MUA38_10775) - 2169389..2169793 (-) 405 WP_262633483.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=672854 MUA38_RS10765 WP_000932694.1 2165601..2165996(-) (ssb) [Staphylococcus aureus strain IVB6158]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=672854 MUA38_RS10765 WP_000932694.1 2165601..2165996(-) (ssb) [Staphylococcus aureus strain IVB6158]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992