Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   MUA38_RS04850 Genome accession   NZ_CP094800
Coordinates   998902..999888 (+) Length   328 a.a.
NCBI ID   WP_000959277.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6158     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 993902..1004888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA38_RS04825 (MUA38_04820) opp4B 994105..995067 (+) 963 WP_000593417.1 oligopeptide ABC transporter permease -
  MUA38_RS04830 (MUA38_04825) opp4C 995079..995960 (+) 882 WP_001180271.1 oligopeptide ABC transporter permease -
  MUA38_RS04835 (MUA38_04830) trpS 996002..996991 (-) 990 WP_000448929.1 tryptophan--tRNA ligase -
  MUA38_RS04840 (MUA38_04835) spxA 997286..997681 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  MUA38_RS04845 (MUA38_04840) mecA 998062..998781 (+) 720 WP_001217727.1 adaptor protein MecA -
  MUA38_RS04850 (MUA38_04845) coiA 998902..999888 (+) 987 WP_000959277.1 competence protein CoiA Machinery gene
  MUA38_RS04855 (MUA38_04850) pepF 999936..1001744 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  MUA38_RS04860 (MUA38_04855) yjbH 1002205..1003011 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  MUA38_RS04865 (MUA38_04860) - 1003034..1003399 (-) 366 WP_250406022.1 truncated hemoglobin YjbI -
  MUA38_RS04870 (MUA38_04865) - 1003503..1004096 (-) 594 WP_000224616.1 CYTH domain-containing protein -
  MUA38_RS04875 (MUA38_04870) - 1004282..1004629 (+) 348 WP_001242107.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38695.27 Da        Isoelectric Point: 9.5127

>NTDB_id=672829 MUA38_RS04850 WP_000959277.1 998902..999888(+) (coiA) [Staphylococcus aureus strain IVB6158]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKGNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLSDNLNYFKLKKFIVALDSKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=672829 MUA38_RS04850 WP_000959277.1 998902..999888(+) (coiA) [Staphylococcus aureus strain IVB6158]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTTAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAGGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTTG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTACTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGATAGCAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.951

100

0.97
  coiA Staphylococcus aureus N315

96.951

100

0.97