Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MUA16_RS10650 Genome accession   NZ_CP094797
Coordinates   2144203..2144598 (-) Length   131 a.a.
NCBI ID   WP_262515898.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6163     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2139203..2149598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA16_RS10625 (MUA16_10615) thiE 2139664..2140305 (-) 642 WP_000483150.1 thiamine phosphate synthase -
  MUA16_RS10630 (MUA16_10620) thiM 2140307..2141098 (-) 792 WP_001108496.1 hydroxyethylthiazole kinase -
  MUA16_RS10635 (MUA16_10625) thiD 2141082..2141912 (-) 831 WP_000594963.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MUA16_RS10640 (MUA16_10630) tenA 2141905..2142594 (-) 690 WP_000396068.1 thiaminase II -
  MUA16_RS10645 (MUA16_10635) sceD 2143119..2143814 (-) 696 WP_000752015.1 lytic transglycosylase SceD -
  MUA16_RS10650 (MUA16_10640) ssb 2144203..2144598 (-) 396 WP_262515898.1 single-stranded DNA-binding protein Machinery gene
  MUA16_RS10655 (MUA16_10645) - 2144792..2145232 (+) 441 WP_000846746.1 YwpF-like family protein -
  MUA16_RS10660 (MUA16_10650) fabZ 2145289..2145729 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MUA16_RS10665 (MUA16_10655) murA 2145763..2147028 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MUA16_RS10670 (MUA16_10660) - 2147139..2147372 (-) 234 WP_000384523.1 DUF1146 family protein -
  MUA16_RS10675 (MUA16_10665) - 2148251..2148655 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.05 Da        Isoelectric Point: 5.6824

>NTDB_id=672774 MUA16_RS10650 WP_262515898.1 2144203..2144598(-) (ssb) [Staphylococcus aureus strain IVB6163]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIERYTNQGTLVGITGQMRSRK
YDKDGQTHFATELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=672774 MUA16_RS10650 WP_262515898.1 2144203..2144598(-) (ssb) [Staphylococcus aureus strain IVB6163]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAGATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGCCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

98.473

100

0.985
  ssb Staphylococcus aureus MW2

97.71

100

0.977