Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG939_RS10815 Genome accession   NZ_CP109209
Coordinates   2446809..2447627 (-) Length   272 a.a.
NCBI ID   WP_124274787.1    Uniprot ID   A0ABU8A7S3
Organism   Streptomyces sp. NBC_01685     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2441809..2452627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG939_RS10790 (OG939_10755) - 2442462..2442884 (-) 423 WP_329168802.1 Rid family hydrolase -
  OG939_RS10795 (OG939_10760) - 2442881..2444008 (-) 1128 WP_124274791.1 enolase C-terminal domain-like protein -
  OG939_RS10800 (OG939_10765) - 2444088..2444867 (-) 780 WP_124274790.1 creatininase family protein -
  OG939_RS10805 (OG939_10770) - 2444930..2445868 (+) 939 WP_241195197.1 ROK family protein -
  OG939_RS10810 (OG939_10775) - 2445883..2446812 (-) 930 WP_329044120.1 ATP-binding cassette domain-containing protein -
  OG939_RS10815 (OG939_10780) amiE 2446809..2447627 (-) 819 WP_124274787.1 ABC transporter ATP-binding protein Regulator
  OG939_RS10820 (OG939_10785) - 2447624..2448538 (-) 915 WP_329168803.1 ABC transporter permease -
  OG939_RS10825 (OG939_10790) - 2448535..2449533 (-) 999 WP_329168804.1 ABC transporter permease -
  OG939_RS10830 (OG939_10795) - 2449530..2451104 (-) 1575 WP_329168805.1 ABC transporter substrate-binding protein -
  OG939_RS10835 (OG939_10800) - 2451159..2452022 (+) 864 WP_329168806.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 29375.52 Da        Isoelectric Point: 6.5753

>NTDB_id=672693 OG939_RS10815 WP_124274787.1 2446809..2447627(-) (amiE) [Streptomyces sp. NBC_01685]
MTSTTAASPVLEIHDLRVDFRLAATTVHAVRGVSFSVAPGETLAVVGESGSGKSATALSALRLNPEPPCVYAGGHILLDG
KDLLTRGERELGRIRGADLSMIFQDPMTSLDPLQRIGSQVAEVLRHHGGHSRAEARAAALSALDEVGIPDPERRYRQYPH
ELSGGLRQRVMIAAALVARPRVLIADEPTTALDVTVQRQILDLLVRLQQRHGMAVVLITHDLGVVAETADRVVVMHRGEA
VETGDVHDVFARPEDPYTRRLLDATPRLETAG

Nucleotide


Download         Length: 819 bp        

>NTDB_id=672693 OG939_RS10815 WP_124274787.1 2446809..2447627(-) (amiE) [Streptomyces sp. NBC_01685]
ATGACCTCCACCACCGCCGCATCACCCGTCCTGGAGATCCACGACCTGCGCGTCGACTTCCGCCTCGCCGCCACCACCGT
CCACGCGGTCCGCGGAGTCAGCTTCTCCGTCGCACCCGGCGAGACCCTCGCCGTCGTCGGCGAATCGGGCAGCGGCAAGT
CCGCGACCGCGCTGTCCGCGCTCCGGCTCAACCCCGAGCCGCCCTGCGTCTACGCCGGCGGGCACATCCTGCTCGACGGG
AAGGACCTGCTGACCCGCGGCGAACGCGAACTCGGGCGCATCAGGGGCGCCGACCTGTCCATGATCTTCCAGGACCCGAT
GACCAGCCTCGACCCGCTGCAGCGCATCGGCAGCCAGGTCGCCGAGGTCCTGCGCCACCACGGCGGCCACAGCCGGGCCG
AAGCCAGGGCGGCGGCGCTGTCCGCCCTCGACGAGGTGGGCATCCCGGACCCCGAGCGCCGCTACCGCCAGTACCCCCAC
GAGCTGTCCGGCGGACTGCGCCAGCGCGTCATGATCGCCGCCGCGCTCGTCGCCCGCCCCCGCGTCCTCATCGCCGACGA
ACCCACCACCGCGCTCGACGTCACCGTGCAGCGCCAGATCCTCGACCTCCTCGTCCGGCTCCAGCAACGCCACGGCATGG
CCGTCGTCCTCATCACCCACGACCTCGGTGTCGTCGCGGAGACCGCCGACCGTGTGGTGGTCATGCACCGCGGCGAGGCC
GTCGAGACCGGGGACGTCCACGACGTGTTCGCCCGCCCCGAGGACCCGTACACCCGCCGACTGCTCGACGCGACGCCCCG
ACTGGAGACCGCAGGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(31-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

48.496

97.794

0.474
  amiE Streptococcus thermophilus LMG 18311

48.12

97.794

0.471
  amiE Streptococcus thermophilus LMD-9

48.12

97.794

0.471
  oppD Streptococcus mutans UA159

48.473

96.324

0.467