Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MUA80_RS11470 Genome accession   NZ_CP094791
Coordinates   2264579..2264974 (-) Length   131 a.a.
NCBI ID   WP_000932696.1    Uniprot ID   A0A166JXQ7
Organism   Staphylococcus aureus strain IVB6166     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2259579..2269974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA80_RS11445 (MUA80_11420) thiE 2260040..2260681 (-) 642 WP_045179393.1 thiamine phosphate synthase -
  MUA80_RS11450 (MUA80_11425) thiM 2260683..2261474 (-) 792 WP_001108496.1 hydroxyethylthiazole kinase -
  MUA80_RS11455 (MUA80_11430) thiD 2261458..2262288 (-) 831 WP_000594963.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MUA80_RS11460 (MUA80_11435) tenA 2262281..2262970 (-) 690 WP_000396068.1 thiaminase II -
  MUA80_RS11465 (MUA80_11440) sceD 2263495..2264190 (-) 696 WP_000752015.1 lytic transglycosylase SceD -
  MUA80_RS11470 (MUA80_11445) ssb 2264579..2264974 (-) 396 WP_000932696.1 single-stranded DNA-binding protein Machinery gene
  MUA80_RS11475 (MUA80_11450) - 2265168..2265608 (+) 441 WP_000846746.1 YwpF-like family protein -
  MUA80_RS11480 (MUA80_11455) fabZ 2265665..2266105 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MUA80_RS11485 (MUA80_11460) murA 2266139..2267404 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MUA80_RS11490 (MUA80_11465) - 2267515..2267748 (-) 234 WP_000384523.1 DUF1146 family protein -
  MUA80_RS11495 (MUA80_11470) - 2268627..2269031 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15070.11 Da        Isoelectric Point: 5.6824

>NTDB_id=672653 MUA80_RS11470 WP_000932696.1 2264579..2264974(-) (ssb) [Staphylococcus aureus strain IVB6166]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIERYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=672653 MUA80_RS11470 WP_000932696.1 2264579..2264974(-) (ssb) [Staphylococcus aureus strain IVB6166]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAGATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A166JXQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985