Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SITYG_RS04270 Genome accession   NZ_AP014880
Coordinates   852819..853622 (+) Length   267 a.a.
NCBI ID   WP_003075634.1    Uniprot ID   A0AAD1FJP4
Organism   Streptococcus intermedius strain TYG1620     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 847819..858622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS04250 (SITYG_08290) - 848791..850104 (+) 1314 WP_096362762.1 glycosyltransferase family 4 protein -
  SITYG_RS04255 (SITYG_08300) - 850131..850472 (+) 342 WP_096362763.1 hypothetical protein -
  SITYG_RS04260 (SITYG_08310) micA 850771..851472 (+) 702 WP_003025150.1 response regulator YycF Regulator
  SITYG_RS04265 (SITYG_08320) micB 851465..852817 (+) 1353 WP_096362764.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SITYG_RS04270 (SITYG_08330) vicX 852819..853622 (+) 804 WP_003075634.1 MBL fold metallo-hydrolase Regulator
  SITYG_RS04275 (SITYG_08340) - 853631..853990 (+) 360 WP_096362765.1 YbaN family protein -
  SITYG_RS04280 (SITYG_08350) rnc 854379..855077 (+) 699 WP_003072976.1 ribonuclease III -
  SITYG_RS04285 (SITYG_08360) smc 855068..858601 (+) 3534 WP_096362766.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29893.80 Da        Isoelectric Point: 6.0341

>NTDB_id=67256 SITYG_RS04270 WP_003075634.1 852819..853622(+) (vicX) [Streptococcus intermedius strain TYG1620]
MNEKGFKYSILASGSTGNCFYLETPKRKLLIDAGLSGKKITSLLSEIDRKPEDLDAILVTHEHKDHIHGVGVLARKYHLD
IYANQDTWNAMETALGKIDVSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRLMKDDKSFVLLTDTGYVSDRMAGII
ENADGYLIESNHDIEILRSGAYPWSLKQRILSDQGHLSNDDGAETMIRTLGIRTKKIYLGHLSKENNTKELAHITMVNQL
AQADLAVEHDFHVYDTSPDTATPLTNI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=67256 SITYG_RS04270 WP_003075634.1 852819..853622(+) (vicX) [Streptococcus intermedius strain TYG1620]
ATGAACGAGAAAGGATTTAAGTACAGTATTTTAGCGTCGGGTTCTACTGGTAATTGTTTCTATTTAGAAACCCCGAAGAG
AAAGTTGTTGATTGATGCAGGTTTATCCGGAAAGAAAATTACTAGTTTGTTGAGCGAAATTGATCGTAAGCCAGAGGATT
TGGATGCTATTTTGGTGACGCATGAACATAAAGACCATATTCATGGTGTGGGTGTTTTAGCACGGAAATATCATTTAGAT
ATTTATGCTAATCAAGATACTTGGAATGCCATGGAAACAGCGCTTGGAAAGATTGATGTCAGTCAGAAGCATATTTTTGA
AATGGGAAAAACGAAAACATTTGGTGATATTGATATTGAAAGTTTTGGGGTCAGTCATGATGCGGTTGCACCACAATTCT
ATCGATTGATGAAAGATGACAAAAGTTTTGTTTTGCTGACGGACACTGGTTATGTCAGTGATCGGATGGCAGGAATCATT
GAAAATGCAGATGGCTATTTGATTGAATCAAATCATGATATTGAAATCCTGCGCAGTGGTGCTTATCCTTGGAGTTTAAA
GCAGCGGATTTTGTCTGATCAAGGGCATTTGTCGAATGATGATGGTGCTGAAACTATGATTCGCACTCTTGGGATTCGGA
CAAAGAAAATCTATCTAGGACATCTCAGCAAGGAAAATAATACTAAAGAATTGGCTCATATTACAATGGTCAATCAATTG
GCACAAGCTGACTTGGCAGTGGAGCATGATTTTCATGTGTATGATACCTCACCAGATACGGCGACACCTTTAACTAATAT
TTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

81.273

100

0.813

Multiple sequence alignment