Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   MUA13_RS02855 Genome accession   NZ_CP094787
Coordinates   590631..591200 (+) Length   189 a.a.
NCBI ID   WP_103188362.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6168     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 585631..596200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA13_RS02830 (MUA13_02825) cysE 586844..587491 (+) 648 WP_072399243.1 serine O-acetyltransferase -
  MUA13_RS02835 (MUA13_02830) cysS 587475..588875 (+) 1401 WP_000631962.1 cysteine--tRNA ligase -
  MUA13_RS02840 (MUA13_02835) - 588868..589272 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  MUA13_RS02845 (MUA13_02840) rlmB 589280..590026 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MUA13_RS02850 (MUA13_02845) - 590026..590550 (+) 525 WP_252570731.1 NYN domain-containing protein -
  MUA13_RS02855 (MUA13_02850) sigH 590631..591200 (+) 570 WP_103188362.1 sigma-70 family RNA polymerase sigma factor Regulator
  MUA13_RS02860 (MUA13_02855) rpmG 591315..591458 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  MUA13_RS02865 (MUA13_02860) secE 591514..591696 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  MUA13_RS02870 (MUA13_02865) nusG 591709..592257 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  MUA13_RS02875 (MUA13_02870) rplK 592438..592860 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  MUA13_RS02880 (MUA13_02875) rplA 593068..593760 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  MUA13_RS02885 (MUA13_02880) rplJ 594032..594532 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  MUA13_RS02890 (MUA13_02885) rplL 594575..594943 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  MUA13_RS02895 (MUA13_02890) - 595118..595726 (+) 609 WP_006189707.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23051.87 Da        Isoelectric Point: 9.6871

>NTDB_id=672533 MUA13_RS02855 WP_103188362.1 590631..591200(+) (sigH) [Staphylococcus aureus strain IVB6168]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRGKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=672533 MUA13_RS02855 WP_103188362.1 590631..591200(+) (sigH) [Staphylococcus aureus strain IVB6168]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGAGGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979