Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SITYG_RS03375 Genome accession   NZ_AP014880
Coordinates   649398..651200 (+) Length   600 a.a.
NCBI ID   WP_096362662.1    Uniprot ID   -
Organism   Streptococcus intermedius strain TYG1620     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 644398..656200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS03355 (SITYG_06480) - 646097..646414 (+) 318 WP_006267580.1 PTS cellobiose transporter subunit IIA -
  SITYG_RS03360 (SITYG_06490) - 646437..646943 (+) 507 WP_096362659.1 hypothetical protein -
  SITYG_RS03365 (SITYG_06500) celB 646983..648326 (+) 1344 WP_096362660.1 PTS cellobiose transporter subunit IIC -
  SITYG_RS03370 (SITYG_06510) coiA 648415..649446 (+) 1032 WP_096362661.1 competence protein CoiA Machinery gene
  SITYG_RS03375 (SITYG_06520) pepF 649398..651200 (+) 1803 WP_096362662.1 oligoendopeptidase F Regulator
  SITYG_RS03380 (SITYG_06530) - 651202..651885 (+) 684 WP_020998869.1 O-methyltransferase -
  SITYG_RS03385 (SITYG_06540) prsA 651992..652930 (+) 939 WP_003073287.1 peptidylprolyl isomerase PrsA -
  SITYG_RS03395 (SITYG_06550) - 653155..653640 (+) 486 WP_096362663.1 LURP-one-related/scramblase family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69253.59 Da        Isoelectric Point: 4.6883

>NTDB_id=67252 SITYG_RS03375 WP_096362662.1 649398..651200(+) (pepF) [Streptococcus intermedius strain TYG1620]
MAKQRNEIEEKYTWDLTTIFPTDEAFEMELAQVSKELKEASHLAGHLLDSADSLLKTTAIQMDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMAIYSEFGQVFAFYEPEFMAITDEQYQAFLAEKPELQVYQHFFDKLLQKKPHILSQREEELLAGA
GEIFSAAGDTFGILDNADIVFPIVHDEEGNEVQLTHGNYISLVEAKNRTVRKEAYEALYSVYEQYQHTYAKTLQTNVKVH
NYNAKVRKFSSAREAALSANFIPESVYESLVSAVNKHLPLLHRYVQLRAKILGISDLKMYDVYTPLSEIDYKFTYEAALT
KAEEVLAILGDDYLNRVKKAFSERWIDVCENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVDDDQTRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNDLYADLNEKYYGLTKEDNPQIQYEWARIPHFYYDYYVFQYATGFSAASALADKIVNGTQEDKEKYLHYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=67252 SITYG_RS03375 WP_096362662.1 649398..651200(+) (pepF) [Streptococcus intermedius strain TYG1620]
ATGGCAAAACAAAGAAATGAAATTGAAGAAAAATATACTTGGGATTTAACAACGATTTTCCCAACAGATGAAGCGTTTGA
AATGGAATTAGCGCAAGTTTCAAAGGAATTAAAAGAAGCTAGTCATTTAGCAGGTCATCTTTTGGATTCAGCCGATAGCC
TTTTAAAAACGACAGCCATCCAAATGGATTTAATGCGTCGCATTGAAAAGCTCTATTCCTATGCTCACATGAAAAATGAC
CAAGATACGCGTGTGGCAAAATATCAAGAGTATCAAGCTAAGGGCATGGCTATTTATAGCGAGTTCGGGCAGGTGTTTGC
TTTCTATGAGCCAGAATTTATGGCAATTACAGATGAACAGTATCAGGCTTTCTTAGCTGAAAAACCTGAATTGCAAGTCT
ATCAGCACTTCTTTGACAAGTTATTGCAAAAGAAACCTCACATCCTTTCTCAACGTGAGGAAGAATTGTTGGCAGGTGCT
GGTGAAATTTTTAGTGCCGCTGGTGATACTTTTGGAATTTTGGATAATGCCGATATCGTCTTTCCAATTGTACATGACGA
GGAAGGCAATGAAGTACAATTAACGCATGGAAATTACATTAGCTTAGTGGAGGCAAAAAATCGTACAGTCCGTAAGGAAG
CTTATGAAGCACTTTATAGTGTTTATGAGCAATATCAACATACTTATGCTAAGACACTTCAAACAAATGTTAAAGTGCAT
AATTACAATGCAAAAGTACGTAAGTTTTCTTCAGCACGCGAAGCAGCCTTGTCTGCTAACTTTATTCCAGAAAGTGTTTA
TGAGAGTTTGGTATCGGCAGTCAACAAACATTTACCACTCTTACATCGCTATGTTCAGTTACGAGCTAAGATTTTAGGCA
TTTCAGATCTCAAGATGTATGACGTTTATACACCGCTATCAGAGATAGATTATAAATTTACCTATGAAGCAGCTTTGACG
AAAGCGGAAGAAGTTTTAGCAATTCTTGGAGATGATTATCTTAACCGAGTGAAAAAAGCCTTTTCAGAGCGTTGGATTGA
TGTTTGTGAGAATCAAGGTAAACGGTCAGGAGCTTATTCTGGTGGCTCTTACGATACTAATGCTTTTATGTTGCTGAATT
GGCAAGATACCTTAGATAATCTCTTCACCTTGGTTCATGAAACGGGTCATAGTATGCATTCTAGCTATACTCGTGAAACA
CAGCCTTATGTTTATGGTGATTATTCTATTTTCTTAGCTGAGATTGCTTCTACTACCAATGAAAATATACTGACGGAGAA
ATTATTGGAAGAAGTAGATGACGATCAAACTCGTTTTGCGATTCTGAATCATTTCTTGGATGGCTTCCGCGGAACTGTTT
TCCGCCAAACTCAATTTGCTGAGTTTGAGCATGCTATCCATAAGGCTGATCAAGAAGGTCAAGTCTTAACTAGTGAATTT
TTGAATGATTTATACGCAGATTTGAACGAAAAATATTATGGCTTGACGAAAGAAGATAATCCACAAATTCAATATGAATG
GGCACGGATTCCGCATTTTTACTATGACTATTATGTATTTCAATATGCGACTGGTTTTTCAGCAGCATCTGCTTTAGCTG
ATAAAATTGTCAATGGAACACAAGAAGATAAAGAGAAATATCTCCATTATCTCAAAGCAGGAAATTCTGATTATCCGCTG
AATGTCATTAAAAAAGCTGGTGTTGATATGGAAAAAGAAGACTATCTCAATGCTGCCTTTGCAGTCTTTGAACGTCGTCT
TGATGAATTTGAAGCACTTGTAGAAAAGTTAGGCTTGGCATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.792

99.333

0.683

Multiple sequence alignment