Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG963_RS25590 Genome accession   NZ_CP109190
Coordinates   5675193..5676605 (-) Length   470 a.a.
NCBI ID   WP_030925349.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01707     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5670193..5681605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG963_RS25570 (OG963_25585) - 5670406..5671056 (-) 651 WP_030925343.1 SigE family RNA polymerase sigma factor -
  OG963_RS25575 (OG963_25590) - 5671233..5672132 (-) 900 WP_030925345.1 A/G-specific adenine glycosylase -
  OG963_RS25580 (OG963_25595) - 5672971..5673780 (+) 810 WP_371799484.1 hypothetical protein -
  OG963_RS25585 (OG963_25600) disA 5673988..5675112 (-) 1125 WP_030972387.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG963_RS25590 (OG963_25605) radA/sms 5675193..5676605 (-) 1413 WP_030925349.1 DNA repair protein RadA Machinery gene
  OG963_RS25595 (OG963_25610) - 5676796..5678622 (+) 1827 WP_093777830.1 hypothetical protein -
  OG963_RS25600 (OG963_25615) - 5678654..5679523 (-) 870 WP_093777828.1 hypothetical protein -
  OG963_RS25605 (OG963_25620) - 5679564..5680511 (+) 948 WP_093777826.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49610.75 Da        Isoelectric Point: 8.0068

>NTDB_id=672484 OG963_RS25590 WP_030925349.1 5675193..5676605(-) (radA/sms) [Streptomyces sp. NBC_01707]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSSAALPIGQVDSRQATARPTGVDE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTAEESASQVRLRADRIRAINDHLFLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPPGMKVTEVANMGDALRVLPRRSRTEPPQEADARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=672484 OG963_RS25590 WP_030925349.1 5675193..5676605(-) (radA/sms) [Streptomyces sp. NBC_01707]
ATGGCTGCCCGTACAAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGATGCCCCGAATGCCAGGCGTGGGGAACGGTCGAGGAGTTCGGCGGCGCCCCTGCCGTGCGGACGACGGCGGCCG
GCCGCGTCAGCTCGGCCGCACTCCCCATCGGCCAGGTCGACAGCCGGCAGGCAACCGCCCGGCCGACCGGGGTGGACGAG
CTGGACCGGGTGCTCGGCGGCGGGCTGGTCCCCGGCGCCGTGGTGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCGAC
GCTCCTGCTGGATGTGGCCGCCAAGGCCGCCAGCGACGAGCACCGCACCCTCTATGTCACCGCGGAGGAGTCCGCGAGCC
AGGTGCGGCTGCGTGCCGACCGGATCCGGGCGATCAACGACCACCTCTTCCTCGCCGCCGAGACCGACCTCTCCGCGGTC
CTCGGCCATCTGGACGCGGTCAAGCCGTCCCTGCTCATCCTCGACTCCGTGCAGACCGTCGCCTCGCCCGAGATCGAAGG
CGCACCCGGCGGGATGGCACAGGTCCGGGAGGTGGCCGGTGCACTCATCCGCGCCTCCAAGGAGCGTGGCATGTCCACGC
TCCTGGTCGGCCATGTCACCAAGGACGGCGCGATCGCGGGGCCGCGACTGCTGGAGCACCTCGTCGATGTGGTGCTGTCC
TTCGAGGGCGACCGGCATGCGCGCCTCCGGCTGGTCCGGGGCGTGAAGAACCGGTACGGGGCGACCGACGAGGTCGGCTG
TTTCGAACTGCACGACGAGGGCATCACGGGCCTCGCCGACCCCTCCGGCCTCTTCCTCACCCGGCGCGACGAACCCGTGC
CGGGCACCTGTCTGACGGTCACGCTGGAGGGGCGGCGCCCGCTCGTCGCCGAAGTGCAGGCGCTGACGGTCGATTCGCAG
ATCCCCTCACCGCGGCGCACCACCTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTGGCGGTTCTGGAGCAGCGCGG
CCGGATCAGCGCGCTCGGCAAACGGGACATCTACAGCGCCACGGTCGGCGGCGTGAAGCTTTCCGAACCCGCCGCGGACC
TTGCGATCGCACTCGCGCTGGCCAGTGCGGCGAGCGACACACCACTGCCCAAGAACCTGGTGGCGATCGGCGAGGTGGGC
CTTGCGGGCGAGGTCAGAAGGGTTACGGGGGTGCAGCGCAGACTGGCCGAAGCACACCGGCTGGGCTTCACCCACGCGCT
GGTCCCGACCGACCCGGGGAAGGTCCCACCCGGTATGAAGGTCACGGAAGTCGCCAACATGGGCGACGCGCTGAGAGTGC
TCCCGCGCCGGTCTCGTACAGAGCCCCCACAGGAGGCCGACGCACGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(82-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.267

96.383

0.417
  radA Streptococcus mitis NCTC 12261

42.605

96.383

0.411
  radA Streptococcus mitis SK321

42.605

96.383

0.411
  radA Streptococcus pneumoniae Rx1

42.163

96.383

0.406
  radA Streptococcus pneumoniae D39

42.163

96.383

0.406
  radA Streptococcus pneumoniae R6

42.163

96.383

0.406
  radA Streptococcus pneumoniae TIGR4

42.163

96.383

0.406