Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG963_RS22070 Genome accession   NZ_CP109190
Coordinates   4915150..4915749 (-) Length   199 a.a.
NCBI ID   WP_030929396.1    Uniprot ID   A0ABV2UGK5
Organism   Streptomyces sp. NBC_01707     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4910150..4920749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG963_RS22050 (OG963_22065) - 4910891..4911466 (-) 576 WP_030929408.1 SigE family RNA polymerase sigma factor -
  OG963_RS22055 (OG963_22070) - 4911846..4912910 (-) 1065 WP_093773513.1 aspartate-semialdehyde dehydrogenase -
  OG963_RS22060 (OG963_22075) - 4912907..4914178 (-) 1272 WP_030929402.1 aspartate kinase -
  OG963_RS22065 (OG963_22080) - 4914398..4915057 (-) 660 WP_093773515.1 DUF5063 domain-containing protein -
  OG963_RS22070 (OG963_22085) recR 4915150..4915749 (-) 600 WP_030929396.1 recombination mediator RecR Machinery gene
  OG963_RS22075 (OG963_22090) - 4915823..4916158 (-) 336 WP_078852974.1 YbaB/EbfC family nucleoid-associated protein -
  OG963_RS22080 (OG963_22095) - 4916518..4917333 (+) 816 WP_093773517.1 SLATT domain-containing protein -
  OG963_RS22085 (OG963_22100) - 4917401..4918051 (-) 651 WP_093773519.1 hypothetical protein -
  OG963_RS22090 (OG963_22105) - 4918185..4918916 (-) 732 WP_030929384.1 GntR family transcriptional regulator -
  OG963_RS22095 (OG963_22110) - 4919029..4920411 (-) 1383 WP_093773521.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21874.16 Da        Isoelectric Point: 5.1721

>NTDB_id=672474 OG963_RS22070 WP_030929396.1 4915150..4915749(-) (recR) [Streptomyces sp. NBC_01707]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCSVCGNVAQEEQCGICRDARRDRTV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSVTELILATDPNLEGEATATYLARMIK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=672474 OG963_RS22070 WP_030929396.1 4915150..4915749(-) (recR) [Streptomyces sp. NBC_01707]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTACGCCGTCTCGCCCATGCCCTCCTGGAGGTCAAGGACAAGGTCC
GGTTCTGCTCGGTGTGCGGCAATGTCGCGCAGGAGGAGCAGTGCGGGATCTGCCGCGACGCGCGTCGCGACCGGACGGTG
ATCTGTGTGGTCGAGGAGCCGAAGGATGTCGTGGCGATCGAGCGGACCCGTGAGTTCCGCGGCCGTTACCACGTCCTCGG
CGGGGCGATCAGCCCGATCGAGGGCGTCGGTCCGGACGATCTGCGCATCCGTGAGCTGCTGGCGAGGCTCGCCGACGGGT
CCGTCACGGAACTGATCCTGGCCACCGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTGGCGCGGATGATCAAG
CCGATGGGCCTGCGGGTGACGCGGCTTGCCAGCGGGCTGCCGGTGGGCGGCGACCTCGAGTACGCGGACGAGGTCACCCT
GGGCCGCGCGTTCGAGGGGAGGCGGCTGCTCGATGTGTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462