Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   MUA59_RS02715 Genome accession   NZ_CP094782
Coordinates   568533..569102 (+) Length   189 a.a.
NCBI ID   WP_262607890.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6172     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 563533..574102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA59_RS02690 (MUA59_02675) cysE 564746..565393 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  MUA59_RS02695 (MUA59_02680) cysS 565377..566777 (+) 1401 WP_262613877.1 cysteine--tRNA ligase -
  MUA59_RS02700 (MUA59_02685) - 566770..567174 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  MUA59_RS02705 (MUA59_02690) rlmB 567182..567928 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MUA59_RS02710 (MUA59_02695) - 567928..568452 (+) 525 WP_000664738.1 NYN domain-containing protein -
  MUA59_RS02715 (MUA59_02700) sigH 568533..569102 (+) 570 WP_262607890.1 sigma-70 family RNA polymerase sigma factor Regulator
  MUA59_RS02720 (MUA59_02705) rpmG 569217..569360 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  MUA59_RS02725 (MUA59_02710) secE 569416..569598 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  MUA59_RS02730 (MUA59_02715) nusG 569611..570159 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  MUA59_RS02735 (MUA59_02720) rplK 570340..570762 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  MUA59_RS02740 (MUA59_02725) rplA 570970..571662 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  MUA59_RS02745 (MUA59_02730) rplJ 571934..572434 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  MUA59_RS02750 (MUA59_02735) rplL 572478..572846 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  MUA59_RS02755 (MUA59_02740) - 573021..573629 (+) 609 WP_000020308.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23070.99 Da        Isoelectric Point: 9.3965

>NTDB_id=672444 MUA59_RS02715 WP_262607890.1 568533..569102(+) (sigH) [Staphylococcus aureus strain IVB6172]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRLVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=672444 MUA59_RS02715 WP_262607890.1 568533..569102(+) (sigH) [Staphylococcus aureus strain IVB6172]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTTGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGCGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974