Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OIE83_RS18780 Genome accession   NZ_CP109188
Coordinates   4115748..4116347 (+) Length   199 a.a.
NCBI ID   WP_099173476.1    Uniprot ID   A0ABU8A4N2
Organism   Streptomyces sp. NBC_01708     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4110748..4121347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE83_RS18755 (OIE83_18750) - 4111196..4112569 (+) 1374 WP_099173471.1 aspartate aminotransferase family protein -
  OIE83_RS18760 (OIE83_18755) - 4112640..4113356 (+) 717 WP_124277695.1 GntR family transcriptional regulator -
  OIE83_RS18765 (OIE83_18760) - 4113457..4114107 (+) 651 WP_124277694.1 hypothetical protein -
  OIE83_RS18770 (OIE83_18765) - 4114198..4114983 (-) 786 WP_124277693.1 SLATT domain-containing protein -
  OIE83_RS18775 (OIE83_18770) - 4115343..4115678 (+) 336 WP_147984368.1 YbaB/EbfC family nucleoid-associated protein -
  OIE83_RS18780 (OIE83_18775) recR 4115748..4116347 (+) 600 WP_099173476.1 recombination mediator RecR Machinery gene
  OIE83_RS18785 (OIE83_18780) - 4116431..4117090 (+) 660 WP_147983470.1 DUF5063 domain-containing protein -
  OIE83_RS18790 (OIE83_18785) - 4117307..4118578 (+) 1272 WP_099173478.1 aspartate kinase -
  OIE83_RS18795 (OIE83_18790) - 4118575..4119639 (+) 1065 WP_329210609.1 aspartate-semialdehyde dehydrogenase -
  OIE83_RS18800 (OIE83_18795) - 4119999..4120574 (+) 576 WP_099173480.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21929.24 Da        Isoelectric Point: 5.1777

>NTDB_id=672394 OIE83_RS18780 WP_099173476.1 4115748..4116347(+) (recR) [Streptomyces sp. NBC_01708]
MYEGVVQELIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCEICGNVAQQEQCGICRDARRDRSV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGSITELILATDPNLEGEATATYLARMVK
PMGLRVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=672394 OIE83_RS18780 WP_099173476.1 4115748..4116347(+) (recR) [Streptomyces sp. NBC_01708]
TTGTACGAAGGCGTGGTTCAAGAGCTGATCGACGAGCTGGGCAGGCTGCCGGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTACGCCGTCTGGCCCATGCCCTCCTGGAGGTCAAGGACAAGGTCC
GCTTCTGCGAGATCTGCGGCAACGTCGCCCAACAGGAGCAGTGCGGCATCTGCCGGGACGCGCGCCGTGACCGCTCGGTC
ATCTGCGTCGTGGAGGAGCCCAAGGACGTGGTGGCGATCGAGCGGACCCGTGAGTTCCGGGGCCGCTACCACGTGCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCCGACGATCTGCGCATCAGGGAGCTGCTGGCCCGGCTCGCGGACGGCT
CGATCACCGAGCTGATCCTGGCGACCGACCCCAACCTGGAGGGCGAGGCCACCGCGACGTACCTCGCCCGGATGGTCAAG
CCGATGGGCCTGCGGGTCACACGGCTGGCCAGCGGGCTGCCCGTGGGCGGCGACCTGGAGTACGCCGACGAGGTGACTCT
GGGACGCGCCTTCGAGGGGAGGCGGCTGCTCGATGTGTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452