Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OIE77_RS31690 Genome accession   NZ_CP109182
Coordinates   7431202..7431843 (+) Length   213 a.a.
NCBI ID   WP_148007552.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01715     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7426202..7436843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE77_RS31670 (OIE77_31665) - 7427070..7427804 (-) 735 WP_148007548.1 transglycosylase SLT domain-containing protein -
  OIE77_RS31675 (OIE77_31670) - 7428103..7429188 (-) 1086 WP_148007549.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OIE77_RS31680 (OIE77_31675) - 7429185..7429880 (-) 696 WP_329322906.1 SDR family NAD(P)-dependent oxidoreductase -
  OIE77_RS31685 (OIE77_31680) - 7430064..7431209 (+) 1146 WP_148007551.1 GAF domain-containing sensor histidine kinase -
  OIE77_RS31690 (OIE77_31685) vraR 7431202..7431843 (+) 642 WP_148007552.1 response regulator transcription factor Regulator
  OIE77_RS31695 (OIE77_31690) - 7431996..7432241 (+) 246 WP_148007553.1 chaplin -
  OIE77_RS31700 (OIE77_31695) - 7432454..7432693 (+) 240 WP_148007554.1 chaplin -
  OIE77_RS31705 (OIE77_31700) - 7433727..7434515 (-) 789 WP_329322907.1 hypothetical protein -
  OIE77_RS31710 (OIE77_31705) - 7434637..7435428 (+) 792 WP_148007556.1 ABC transporter ATP-binding protein -
  OIE77_RS31715 (OIE77_31710) - 7435556..7435990 (+) 435 WP_148007557.1 NfeD family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22838.15 Da        Isoelectric Point: 5.1442

>NTDB_id=672330 OIE77_RS31690 WP_148007552.1 7431202..7431843(+) (vraR) [Streptomyces sp. NBC_01715]
MAEAIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEASDGAEGVALAEELKPDVVLMDVKMPGMDGIDALRRLRELANPAR
VLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGVLLSQEEANSGQGRGGSLTDREREVL
ALIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGAAG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=672330 OIE77_RS31690 WP_148007552.1 7431202..7431843(+) (vraR) [Streptomyces sp. NBC_01715]
GTGGCTGAGGCAATCAAGGTGCTGCTCGTCGACGACCATCAGGTGGTCCGCCGGGGCCTGCGCACCTTTCTCGAGGTGCA
GGACGACATCGAGGTCGTGGGAGAGGCGTCCGACGGCGCCGAAGGGGTCGCCCTCGCCGAGGAGCTGAAGCCCGACGTCG
TCCTCATGGACGTCAAGATGCCGGGCATGGACGGCATCGACGCGCTGCGCAGGCTCCGTGAACTCGCGAACCCCGCACGC
GTGTTGATCGTCACCAGCTTCACCGAGCAGCGCACGGTCGTCCCGGCCCTGCGGGCCGGCGCGGCGGGGTACGTCTACAA
GGACGTGGATCCCGACGCCCTCGCCGGAGCCATCCGTTCCGTGCACGCGGGGCACATCCTGCTGCAGCCCGAGGTGGCGG
GCGTCCTGCTCTCCCAGGAGGAGGCCAACTCCGGCCAGGGCAGGGGAGGTTCGCTCACCGACCGGGAACGGGAGGTGCTC
GCGCTGATCGCCGACGGCCGCTCCAACCGGGAGATCGCCCGCGCGCTCGTCCTCTCCGAGAAGACCGTCAAGACACATGT
CTCGAACATCCTGATGAAGCTCGACCTCGCGGACCGGACACAGGCCGCGTTGTGGGCCGTTCGGCATGGGGCGGCGGGCT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.238

98.592

0.446
  degU Bacillus subtilis subsp. subtilis str. 168

38.009

100

0.394