Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   MUA69_RS02720 Genome accession   NZ_CP094775
Coordinates   574043..574612 (+) Length   189 a.a.
NCBI ID   WP_262607890.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6191     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 569043..579612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA69_RS02695 (MUA69_02680) cysE 570256..570903 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  MUA69_RS02700 (MUA69_02685) cysS 570887..572287 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  MUA69_RS02705 (MUA69_02690) - 572280..572684 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  MUA69_RS02710 (MUA69_02695) rlmB 572692..573438 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MUA69_RS02715 (MUA69_02700) - 573438..573962 (+) 525 WP_000664738.1 NYN domain-containing protein -
  MUA69_RS02720 (MUA69_02705) sigH 574043..574612 (+) 570 WP_262607890.1 sigma-70 family RNA polymerase sigma factor Regulator
  MUA69_RS02725 (MUA69_02710) rpmG 574727..574870 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  MUA69_RS02730 (MUA69_02715) secE 574926..575108 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  MUA69_RS02735 (MUA69_02720) nusG 575121..575669 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  MUA69_RS02740 (MUA69_02725) rplK 575850..576272 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  MUA69_RS02745 (MUA69_02730) rplA 576480..577172 (+) 693 WP_156981933.1 50S ribosomal protein L1 -
  MUA69_RS02750 (MUA69_02735) rplJ 577444..577944 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  MUA69_RS02755 (MUA69_02740) rplL 577988..578356 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  MUA69_RS02760 (MUA69_02745) - 578531..579139 (+) 609 WP_000020308.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23070.99 Da        Isoelectric Point: 9.3965

>NTDB_id=672320 MUA69_RS02720 WP_262607890.1 574043..574612(+) (sigH) [Staphylococcus aureus strain IVB6191]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRLVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=672320 MUA69_RS02720 WP_262607890.1 574043..574612(+) (sigH) [Staphylococcus aureus strain IVB6191]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTTGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGCGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974