Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OIE77_RS19975 Genome accession   NZ_CP109182
Coordinates   4721299..4722708 (+) Length   469 a.a.
NCBI ID   WP_148012276.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01715     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4716299..4727708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE77_RS19960 (OIE77_19955) - 4717251..4718183 (-) 933 WP_329321910.1 Ppx/GppA phosphatase family protein -
  OIE77_RS19965 (OIE77_19960) - 4718255..4719115 (+) 861 WP_148012274.1 hypothetical protein -
  OIE77_RS19970 (OIE77_19965) - 4719119..4720870 (-) 1752 WP_329321912.1 hypothetical protein -
  OIE77_RS19975 (OIE77_19970) radA/sms 4721299..4722708 (+) 1410 WP_148012276.1 DNA repair protein RadA Machinery gene
  OIE77_RS19980 (OIE77_19975) disA 4722777..4723901 (+) 1125 WP_148012277.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OIE77_RS19985 (OIE77_19980) - 4724050..4724886 (-) 837 WP_329321915.1 hypothetical protein -
  OIE77_RS19990 (OIE77_19985) - 4725444..4726364 (+) 921 WP_148012280.1 A/G-specific adenine glycosylase -
  OIE77_RS19995 (OIE77_19990) - 4726625..4727176 (+) 552 WP_148012281.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49866.03 Da        Isoelectric Point: 8.0106

>NTDB_id=672304 OIE77_RS19975 WP_148012276.1 4721299..4722708(+) (radA/sms) [Streptomyces sp. NBC_01715]
MAARTKTAKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLTDPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGRTPPGMKVLEVADMGEALRVLPRSRRREAPREDEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=672304 OIE77_RS19975 WP_148012276.1 4721299..4722708(+) (radA/sms) [Streptomyces sp. NBC_01715]
ATGGCTGCCCGTACGAAAACCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCGCCCCCGCGGTGCGGACCACCACGCCCGGCC
GGGTCACCACCTCCGCGGTCCCCATCGGCCAGGTCGACGGCCGTCAGGCCACCGCGCGCAGCACCGGCGTGCCCGAGCTG
GACCGCGTCCTGGGCGGCGGTCTGGTGCCCGGCGCGGTCGTCCTGCTCGCGGGCGAGCCCGGCGTCGGGAAGTCCACCCT
CCTCCTGGACGTGGCGGCGAAGGCGGCGAGCGACGAGCACCGCACGCTGTACGTGACGGGTGAGGAGTCCGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCAAGGCCATCGACGACCACCTCTATCTGGCCGCGGAGACCGACCTCGCCGCCGTCCTC
GGCCACCTGGACGCCGTGAAGCCCTCCCTCCTCATCCTCGACTCGGTCCAGACCGTCGCCTCCCCGGAGATCGACGGCGC
CCCGGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGGGCGCTCATCCGCGCCTCCAAGGAGCGCGGCATGTCGACGCTCC
TGGTGGGCCATGTCACCAAGGACGGCGCGATCGCCGGCCCCCGCCTGCTGGAACACCTCGTGGACGTGGTCCTGCACTTC
GAGGGCGACCGTCACGCACGCCTCAGGCTGGTCCGGGGGGTCAAGAACCGTTACGGGACGACGGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACCGGGCTGACCGACCCCTCCGGCCTCTTCCTCACCCGCCGCGCCGAGCCGGTCCCGG
GCACCTGTCTGACCGTGACCCTGGAAGGCCGCCGGCCGCTGGTGGCGGAGGTGCAGGCCCTCACGGTCGACTCGCAGATC
CCGTCCCCCCGCCGGACGACTTCCGGCCTGGAGACCTCCCGCGTCTCCATGATGCTGGCCGTCCTGGAGCAGCGGGGCCG
GATCAGCGCCCTCGGAAAGCGGGACATCTACTCGGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCGGCCGCGGACCTCG
CGATCGCCCTCGCGCTCGCGTCCGCCGCGAGTGACACTCCTCTCCCCAAGAACCTCGTCGCGATCGGCGAGGTGGGCCTC
GCCGGGGAGGTCAGACGGGTCACGGGGGTGCAGCGGAGACTGGCCGAGGCCCACCGACTGGGCTTCACCCACGCCCTCGT
TCCGAGCGATCCGGGCAGGACTCCACCCGGTATGAAGGTCCTGGAAGTCGCCGACATGGGCGAGGCTCTGCGGGTCCTTC
CGCGCTCCCGTCGTCGAGAGGCCCCACGGGAGGACGAGGAGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

96.588

0.42
  radA Streptococcus mitis SK321

43.556

95.949

0.418
  radA Streptococcus mitis NCTC 12261

43.556

95.949

0.418
  radA Streptococcus pneumoniae TIGR4

43.333

95.949

0.416
  radA Streptococcus pneumoniae Rx1

43.333

95.949

0.416
  radA Streptococcus pneumoniae D39

43.333

95.949

0.416
  radA Streptococcus pneumoniae R6

43.333

95.949

0.416