Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   MUA47_RS07705 Genome accession   NZ_CP094773
Coordinates   1613884..1614381 (-) Length   165 a.a.
NCBI ID   WP_029656266.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6195     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1608884..1619381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA47_RS07680 (MUA47_07685) gcvPB 1609046..1610518 (-) 1473 WP_000202177.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  MUA47_RS07685 (MUA47_07690) gcvPA 1610511..1611857 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  MUA47_RS07690 (MUA47_07695) gcvT 1611877..1612968 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA47_RS07695 (MUA47_07700) - 1613127..1613651 (-) 525 WP_001015120.1 shikimate kinase -
  MUA47_RS07700 (MUA47_07705) - 1613641..1613787 (-) 147 WP_001789879.1 hypothetical protein -
  MUA47_RS07705 (MUA47_07710) comGF 1613884..1614381 (-) 498 WP_029656266.1 competence type IV pilus minor pilin ComGF Machinery gene
  MUA47_RS07710 (MUA47_07715) comGE 1614299..1614598 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  MUA47_RS07715 (MUA47_07720) comGD 1614585..1615030 (-) 446 Protein_1518 competence type IV pilus minor pilin ComGD -
  MUA47_RS07720 (MUA47_07725) comGC 1615008..1615319 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA47_RS07725 (MUA47_07730) comGB 1615333..1616403 (-) 1071 WP_000776417.1 competence type IV pilus assembly protein ComGB Machinery gene
  MUA47_RS07730 (MUA47_07735) comGA 1616375..1617349 (-) 975 WP_250426016.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA47_RS07735 (MUA47_07740) - 1617401..1618024 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  MUA47_RS07740 (MUA47_07745) - 1618021..1618350 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  MUA47_RS07745 (MUA47_07750) - 1618350..1619336 (-) 987 WP_262634631.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19154.82 Da        Isoelectric Point: 10.2192

>NTDB_id=672292 MUA47_RS07705 WP_029656266.1 1613884..1614381(-) (comGF) [Staphylococcus aureus strain IVB6195]
MILSKVTNKFVLFQKILLLIKRHVYSINVKAFSLIEMLVAMLVISITLLIVPDLIRLSKTFLNESRELTTVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMLNNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYA

Nucleotide


Download         Length: 498 bp        

>NTDB_id=672292 MUA47_RS07705 WP_029656266.1 1613884..1614381(-) (comGF) [Staphylococcus aureus strain IVB6195]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACTACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGTTGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAAATGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAACAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGCTTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(63-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

95.152

100

0.952
  comGF Staphylococcus aureus MW2

95.152

100

0.952