Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MUA35_RS10805 Genome accession   NZ_CP094770
Coordinates   2156800..2157195 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6201     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2151800..2162195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA35_RS10780 (MUA35_10745) thiE 2152399..2153040 (-) 642 WP_000483160.1 thiamine phosphate synthase -
  MUA35_RS10785 (MUA35_10750) thiM 2153042..2153833 (-) 792 WP_262538364.1 hydroxyethylthiazole kinase -
  MUA35_RS10790 (MUA35_10755) thiD 2153817..2154647 (-) 831 WP_031874177.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MUA35_RS10795 (MUA35_10760) tenA 2154640..2155329 (-) 690 WP_262607638.1 thiaminase II -
  MUA35_RS10800 (MUA35_10765) sceD 2155716..2156411 (-) 696 WP_262538358.1 lytic transglycosylase SceD -
  MUA35_RS10805 (MUA35_10770) ssb 2156800..2157195 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  MUA35_RS10810 (MUA35_10775) - 2157389..2157829 (+) 441 WP_000846746.1 YwpF-like family protein -
  MUA35_RS10815 (MUA35_10780) fabZ 2157886..2158326 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MUA35_RS10820 (MUA35_10785) murA 2158360..2159625 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MUA35_RS10825 (MUA35_10790) - 2159725..2159958 (-) 234 WP_000384523.1 DUF1146 family protein -
  MUA35_RS10830 (MUA35_10795) - 2160090..2160183 (-) 94 Protein_2092 hypothetical protein -
  MUA35_RS10835 (MUA35_10800) - 2160777..2161181 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=672228 MUA35_RS10805 WP_000932694.1 2156800..2157195(-) (ssb) [Staphylococcus aureus strain IVB6201]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=672228 MUA35_RS10805 WP_000932694.1 2156800..2157195(-) (ssb) [Staphylococcus aureus strain IVB6201]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCCAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992