Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OIE74_RS15950 Genome accession   NZ_CP109181
Coordinates   3652912..3654324 (+) Length   470 a.a.
NCBI ID   WP_329383590.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01716     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3647912..3659324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE74_RS15930 (OIE74_15930) - 3647921..3648847 (-) 927 WP_329383578.1 sugar phosphate isomerase/epimerase -
  OIE74_RS15935 (OIE74_15935) - 3648988..3649926 (-) 939 WP_329383581.1 Ppx/GppA phosphatase family protein -
  OIE74_RS15940 (OIE74_15940) - 3649966..3650802 (+) 837 WP_329383584.1 hypothetical protein -
  OIE74_RS15945 (OIE74_15945) - 3650828..3652732 (-) 1905 WP_329383587.1 hypothetical protein -
  OIE74_RS15950 (OIE74_15950) radA/sms 3652912..3654324 (+) 1413 WP_329383590.1 DNA repair protein RadA Machinery gene
  OIE74_RS15955 (OIE74_15955) disA 3654369..3655502 (+) 1134 WP_329383594.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OIE74_RS15960 (OIE74_15960) - 3655596..3656459 (-) 864 WP_329383596.1 hypothetical protein -
  OIE74_RS15965 (OIE74_15965) - 3656640..3657401 (+) 762 WP_329392317.1 phosphatase PAP2 family protein -
  OIE74_RS15970 (OIE74_15970) - 3657569..3658489 (+) 921 WP_329383599.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49461.59 Da        Isoelectric Point: 8.0038

>NTDB_id=672218 OIE74_RS15950 WP_329383590.1 3652912..3654324(+) (radA/sms) [Streptomyces sp. NBC_01716]
MAVARTKSAKDRPSYRCTDCGWTTVKWLGRCPECQAWGTVEEFGAPAVRTTAAGRVSTPAVPIGQVDGRTATARSTGVDE
LDRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAADSEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRVSKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVTEVADMGAALSVLPRRGRPDAPRDGKDRR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=672218 OIE74_RS15950 WP_329383590.1 3652912..3654324(+) (radA/sms) [Streptomyces sp. NBC_01716]
ATGGCTGTCGCCCGTACCAAATCCGCCAAGGACCGGCCGTCCTACCGCTGCACCGACTGCGGCTGGACGACCGTCAAGTG
GCTCGGCCGCTGCCCCGAATGCCAGGCCTGGGGCACGGTCGAGGAGTTCGGCGCGCCCGCCGTACGGACGACTGCGGCGG
GACGGGTCAGCACCCCGGCCGTCCCGATCGGCCAGGTCGACGGCCGGACGGCCACGGCACGCTCGACGGGCGTGGACGAG
CTGGACCGCGTCCTCGGCGGCGGTCTCGTGCCGGGAGCCGTCGTGCTGGTGGCCGGCGAGCCGGGCGTGGGCAAGTCCAC
GCTGCTCCTGGACGTCGCGGCGAAGGCGGCCGACTCAGAGCACCGCACGCTCTATGTCACCGGCGAGGAGTCGGCGAGCC
AGGTACGGCTGCGCGCGGACCGCATCAAAGCCATTGACGACCATCTCTATCTCGCCGCCGAGACGGATCTCTCCGCCGTC
CTCGGGCATCTCGACGCGGTCAAGCCGTCGCTGCTCATCCTGGACTCCGTACAGACGGTGGCATCGCCCGAGATCGACGG
GGCGCCCGGCGGCATGGCCCAGGTCCGGGAGGTGGCGGGCGCGCTCATCCGGGTCTCCAAGGAACGGGGCATGTCCACCC
TGCTCGTCGGCCATGTCACCAAGGACGGCGCGATCGCGGGTCCGCGGCTGCTGGAGCACCTGGTGGACGTCGTGCTCTCC
TTCGAAGGCGACCGGCACGCGCGGCTGCGGCTCGTGCGGGGCGTCAAGAACCGGTACGGGACGACGGACGAGGTCGGCTG
CTTCGAACTGCACGACGAAGGCATCACGGGTCTCGCCGATCCCTCCGGCCTCTTCCTCACCCGCCGTGACGAGCCGGTCC
CCGGCACCTGCCTCACGGTCACCCTCGAAGGCCGCCGCCCGCTCGTCGCCGAGGTGCAGGCGCTGACGGTCGACTCCCAG
ATCCCGTCCCCCCGGCGCACCACCTCGGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTTCTGGAGCAGCGCGG
CCGGATCAGCGCGCTCGGCAAGCGCGACATCTACAGCGCGACGGTCGGCGGTGTGAAGCTCTCGGAGCCGGCCGCGGACC
TGGCGGTCGCCCTCGCCCTGGCATCGGCGGCGAGCGACACCCCGCTGCCGAAGAACCTCGTCGCGATCGGCGAGGTGGGT
CTCGCGGGCGAGGTCAGAAGGGTGACGGGCGTCCAGCGCAGACTGGCCGAGGCGCACCGGCTCGGTTTCACACACGCCCT
CGTCCCGACCGATCCCGGGAAGGTCCCGGCCGGTATGAAGGTCACAGAAGTGGCCGACATGGGGGCGGCTCTCAGCGTGC
TTCCGCGCCGGGGTCGCCCGGACGCCCCACGGGACGGCAAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

AAA domain (AAA_25)

(83-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(15-42)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

96.383

0.421
  radA Streptococcus pneumoniae Rx1

44.626

91.064

0.406
  radA Streptococcus pneumoniae D39

44.626

91.064

0.406
  radA Streptococcus mitis SK321

44.626

91.064

0.406
  radA Streptococcus pneumoniae TIGR4

44.626

91.064

0.406
  radA Streptococcus mitis NCTC 12261

44.626

91.064

0.406
  radA Streptococcus pneumoniae R6

44.626

91.064

0.406