Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   MUA35_RS02735 Genome accession   NZ_CP094770
Coordinates   574135..574704 (+) Length   189 a.a.
NCBI ID   WP_262607890.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6201     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 569135..579704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA35_RS02710 (MUA35_02690) cysE 570348..570995 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  MUA35_RS02715 (MUA35_02695) cysS 570979..572379 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  MUA35_RS02720 (MUA35_02700) - 572372..572776 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  MUA35_RS02725 (MUA35_02705) rlmB 572784..573530 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MUA35_RS02730 (MUA35_02710) - 573530..574054 (+) 525 WP_000664738.1 NYN domain-containing protein -
  MUA35_RS02735 (MUA35_02715) sigH 574135..574704 (+) 570 WP_262607890.1 sigma-70 family RNA polymerase sigma factor Regulator
  MUA35_RS02740 (MUA35_02720) rpmG 574819..574962 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  MUA35_RS02745 (MUA35_02725) secE 575018..575200 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  MUA35_RS02750 (MUA35_02730) nusG 575213..575761 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  MUA35_RS02755 (MUA35_02735) rplK 575942..576364 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  MUA35_RS02760 (MUA35_02740) rplA 576572..577264 (+) 693 WP_156981933.1 50S ribosomal protein L1 -
  MUA35_RS02765 (MUA35_02745) rplJ 577536..578036 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  MUA35_RS02770 (MUA35_02750) rplL 578080..578448 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  MUA35_RS02775 (MUA35_02755) - 578623..579231 (+) 609 WP_000020308.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23070.99 Da        Isoelectric Point: 9.3965

>NTDB_id=672195 MUA35_RS02735 WP_262607890.1 574135..574704(+) (sigH) [Staphylococcus aureus strain IVB6201]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRLVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=672195 MUA35_RS02735 WP_262607890.1 574135..574704(+) (sigH) [Staphylococcus aureus strain IVB6201]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTTGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGCGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974