Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   MUA94_RS11125 Genome accession   NZ_CP094768
Coordinates   2230940..2231509 (-) Length   189 a.a.
NCBI ID   WP_262537357.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6202     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2225940..2236509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA94_RS11085 (MUA94_11065) - 2226413..2227021 (-) 609 WP_262537354.1 class I SAM-dependent methyltransferase -
  MUA94_RS11090 (MUA94_11070) rplL 2227196..2227564 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  MUA94_RS11095 (MUA94_11075) rplJ 2227608..2228108 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  MUA94_RS11100 (MUA94_11080) rplA 2228380..2229072 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  MUA94_RS11105 (MUA94_11085) rplK 2229280..2229702 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  MUA94_RS11110 (MUA94_11090) nusG 2229883..2230431 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  MUA94_RS11115 (MUA94_11095) secE 2230444..2230626 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  MUA94_RS11120 (MUA94_11100) rpmG 2230682..2230825 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  MUA94_RS11125 (MUA94_11105) sigH 2230940..2231509 (-) 570 WP_262537357.1 sigma-70 family RNA polymerase sigma factor Regulator
  MUA94_RS11130 (MUA94_11110) - 2231590..2232114 (-) 525 WP_000664738.1 NYN domain-containing protein -
  MUA94_RS11135 (MUA94_11115) rlmB 2232114..2232860 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MUA94_RS11140 (MUA94_11120) - 2232868..2233272 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  MUA94_RS11145 (MUA94_11125) cysS 2233265..2234665 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  MUA94_RS11150 (MUA94_11130) cysE 2234649..2235296 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23044.91 Da        Isoelectric Point: 9.3965

>NTDB_id=672186 MUA94_RS11125 WP_262537357.1 2230940..2231509(-) (sigH) [Staphylococcus aureus strain IVB6202]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=672186 MUA94_RS11125 WP_262537357.1 2230940..2231509(-) (sigH) [Staphylococcus aureus strain IVB6202]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGCGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979