Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MUA94_RS03370 Genome accession   NZ_CP094768
Coordinates   690442..690837 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6202     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 685442..695837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA94_RS03340 (MUA94_03335) - 686515..686919 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  MUA94_RS03345 (MUA94_03340) - 687454..687547 (+) 94 Protein_659 hypothetical protein -
  MUA94_RS03350 (MUA94_03345) - 687679..687912 (+) 234 WP_000384523.1 DUF1146 family protein -
  MUA94_RS03355 (MUA94_03350) murA 688012..689277 (+) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MUA94_RS03360 (MUA94_03355) fabZ 689311..689751 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MUA94_RS03365 (MUA94_03360) - 689808..690248 (-) 441 WP_000846746.1 YwpF-like family protein -
  MUA94_RS03370 (MUA94_03365) ssb 690442..690837 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  MUA94_RS03375 (MUA94_03370) sceD 691226..691921 (+) 696 WP_262538358.1 lytic transglycosylase SceD -
  MUA94_RS03380 (MUA94_03375) tenA 692308..692997 (+) 690 WP_262538360.1 thiaminase II -
  MUA94_RS03385 (MUA94_03380) thiD 692990..693820 (+) 831 WP_262538362.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MUA94_RS03390 (MUA94_03385) thiM 693804..694595 (+) 792 WP_262538364.1 hydroxyethylthiazole kinase -
  MUA94_RS03395 (MUA94_03390) thiE 694597..695238 (+) 642 WP_262538366.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=672153 MUA94_RS03370 WP_000932694.1 690442..690837(+) (ssb) [Staphylococcus aureus strain IVB6202]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=672153 MUA94_RS03370 WP_000932694.1 690442..690837(+) (ssb) [Staphylococcus aureus strain IVB6202]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCCAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992