Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG957_RS27640 Genome accession   NZ_CP109174
Coordinates   6210363..6211427 (+) Length   354 a.a.
NCBI ID   WP_371797325.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01718     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 6205363..6216427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG957_RS27630 (OG957_27640) - 6206761..6208020 (+) 1260 WP_371796267.1 NAD(P)/FAD-dependent oxidoreductase -
  OG957_RS27635 (OG957_27645) dnaG 6208171..6210075 (+) 1905 WP_327124809.1 DNA primase -
  OG957_RS27640 (OG957_27650) rpoS 6210363..6211427 (+) 1065 WP_371797325.1 RNA polymerase sigma factor Regulator
  OG957_RS27645 (OG957_27655) rcrQ 6211444..6213369 (-) 1926 WP_371796268.1 ABC transporter ATP-binding protein Regulator
  OG957_RS27650 (OG957_27660) rcrP 6213369..6215102 (-) 1734 WP_371796269.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 39853.37 Da        Isoelectric Point: 5.0707

>NTDB_id=672076 OG957_RS27640 WP_371797325.1 6210363..6211427(+) (rpoS) [Streptomyces sp. NBC_01718]
MHHPEAAVDHLRPEPPEPSEPSEAVVAADAVLEEQAEVPELPEPRGRPDSGGPSSDLFRQYLREIGRIPLLTAADEVELA
RRVEAGLFAEERLARTPDPDSRLAVDLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEK
FDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGYEPTPEEVAAQLDLTPERVGEVL
RLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLREHLEAVLSTLGERERKVVQLRYGLDDGRPRTLEEIGR
IFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=672076 OG957_RS27640 WP_371797325.1 6210363..6211427(+) (rpoS) [Streptomyces sp. NBC_01718]
ATGCATCATCCGGAGGCAGCGGTGGACCACCTGAGACCCGAACCGCCCGAACCGTCGGAACCGTCCGAGGCCGTCGTCGC
AGCCGACGCCGTCCTGGAGGAGCAGGCGGAGGTGCCCGAACTCCCGGAGCCGCGCGGCCGGCCCGACAGCGGCGGGCCGT
CCTCCGACCTCTTCCGTCAGTACCTGCGGGAGATCGGACGCATCCCGCTGCTCACCGCCGCGGACGAGGTGGAGCTCGCC
CGCCGCGTCGAGGCCGGCCTCTTCGCCGAGGAGCGGCTCGCGAGAACTCCGGACCCGGACTCCCGACTCGCCGTCGATCT
CGACCGGTTGGTGGTCATGGGGCGGATGGCGAAGCGCCGCCTGATCGAGGCGAACCTGCGTCTCGTCGTCTCCGTCGCCA
AGCGCTATGTAGGCCGTGGACTGACCATGCTCGATCTGGTCCAGGAGGGGAACCTCGGACTGATCAGGGCCGTCGAGAAG
TTCGACTACGCCCGGGGCTACAAGTTCTCGACGTACGCGACCTGGTGGATCCGGCAGGCCATGTCCCGGGCCCTCGCCGA
CCAGGCGCGGACGATAAGGGTCCCGGTCCATGTCGTCGAGCTGATCAACCGCGTCGTACGGGTCCAGCGCCGGATGCTCC
AGGAACGCGGCTACGAACCGACGCCCGAAGAGGTCGCCGCCCAGCTCGACCTGACGCCGGAACGGGTCGGTGAAGTGCTG
CGACTCGCCCAGGAACCCGTCTCGCTGCACGCGCCGGTCGGCGAGGAGGACGACGTCGCCCTCGGCGACCTGATCGAGGA
CGGAGACGCGGCGTCCCCCGTGGAGTCCGCCGCGTTCCTGCTGCTGCGCGAGCACCTCGAAGCGGTGCTCTCCACCCTGG
GCGAGCGGGAGCGGAAGGTGGTCCAGCTGCGCTACGGGCTGGACGACGGCCGGCCCCGCACACTCGAAGAGATAGGCCGG
ATCTTCGGCGTGACACGCGAACGCATCCGCCAGATCGAATCCAAGACCCTCAACAAGCTGCGGGACCACGCCTTCGCCGA
CCAGCTCCGCGGCTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(289-341)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-89)

Sigma-70 region 3 (Sigma70_r3)

(200-276)

Sigma-70 region 2 (Sigma70_r2)

(121-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

44.218

83.051

0.367