Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   MUA83_RS02900 Genome accession   NZ_CP094763
Coordinates   597082..597651 (+) Length   189 a.a.
NCBI ID   WP_000872870.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6221     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 592082..602651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA83_RS02875 (MUA83_02870) cysE 593295..593942 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  MUA83_RS02880 (MUA83_02875) cysS 593926..595326 (+) 1401 WP_000631977.1 cysteine--tRNA ligase -
  MUA83_RS02885 (MUA83_02880) - 595319..595723 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  MUA83_RS02890 (MUA83_02885) rlmB 595731..596477 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MUA83_RS02895 (MUA83_02890) - 596477..597001 (+) 525 WP_000664738.1 NYN domain-containing protein -
  MUA83_RS02900 (MUA83_02895) sigH 597082..597651 (+) 570 WP_000872870.1 sigma-70 family RNA polymerase sigma factor Regulator
  MUA83_RS02905 (MUA83_02900) rpmG 597766..597909 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  MUA83_RS02910 (MUA83_02905) secE 597965..598147 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  MUA83_RS02915 (MUA83_02910) nusG 598160..598708 (+) 549 WP_031824561.1 transcription termination/antitermination protein NusG -
  MUA83_RS02920 (MUA83_02915) rplK 598889..599311 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  MUA83_RS02925 (MUA83_02920) rplA 599519..600211 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  MUA83_RS02930 (MUA83_02925) rplJ 600483..600983 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  MUA83_RS02935 (MUA83_02930) rplL 601026..601394 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  MUA83_RS02940 (MUA83_02935) - 601569..602177 (+) 609 WP_000020308.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23083.93 Da        Isoelectric Point: 9.6015

>NTDB_id=672069 MUA83_RS02900 WP_000872870.1 597082..597651(+) (sigH) [Staphylococcus aureus strain IVB6221]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGDQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=672069 MUA83_RS02900 WP_000872870.1 597082..597651(+) (sigH) [Staphylococcus aureus strain IVB6221]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGACCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGCGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979