Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   MUA14_RS07500 Genome accession   NZ_CP094760
Coordinates   1573690..1574136 (-) Length   148 a.a.
NCBI ID   WP_072357807.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6232     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1568690..1579136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA14_RS07470 (MUA14_07460) gcvPA 1569616..1570962 (-) 1347 WP_262541341.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  MUA14_RS07475 (MUA14_07465) gcvT 1570982..1572073 (-) 1092 WP_000093354.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA14_RS07480 (MUA14_07470) - 1572232..1572756 (-) 525 WP_001015120.1 shikimate kinase -
  MUA14_RS07485 (MUA14_07475) - 1572746..1572892 (-) 147 WP_001789879.1 hypothetical protein -
  MUA14_RS07490 (MUA14_07480) comGF 1572989..1573486 (-) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  MUA14_RS07495 (MUA14_07485) comGE 1573404..1573703 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  MUA14_RS07500 (MUA14_07490) comGD 1573690..1574136 (-) 447 WP_072357807.1 competence type IV pilus minor pilin ComGD Machinery gene
  MUA14_RS07505 (MUA14_07495) comGC 1574114..1574425 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA14_RS07510 (MUA14_07500) comGB 1574439..1575509 (-) 1071 WP_000776413.1 competence type IV pilus assembly protein ComGB Machinery gene
  MUA14_RS07515 (MUA14_07505) comGA 1575481..1576455 (-) 975 WP_216805596.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA14_RS07520 (MUA14_07510) - 1576507..1577130 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  MUA14_RS07525 (MUA14_07515) - 1577127..1577456 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  MUA14_RS07530 (MUA14_07520) - 1577456..1578442 (-) 987 WP_000161315.1 ROK family glucokinase -
  MUA14_RS07535 (MUA14_07525) - 1578439..1578642 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=672041 MUA14_RS07500 WP_072357807.1 1573690..1574136(-) (comGD) [Staphylococcus aureus strain IVB6232]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYFKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=672041 MUA14_RS07500 WP_072357807.1 1573690..1574136(-) (comGD) [Staphylococcus aureus strain IVB6232]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATTTTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

98.649

100

0.986
  comGD Staphylococcus aureus N315

98.649

100

0.986