Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MUA86_RS10790 Genome accession   NZ_CP094752
Coordinates   2162402..2162797 (-) Length   131 a.a.
NCBI ID   WP_262515898.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6243     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2157402..2167797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA86_RS10765 (MUA86_10755) thiE 2157863..2158504 (-) 642 WP_000483150.1 thiamine phosphate synthase -
  MUA86_RS10770 (MUA86_10760) thiM 2158506..2159297 (-) 792 WP_001108496.1 hydroxyethylthiazole kinase -
  MUA86_RS10775 (MUA86_10765) thiD 2159281..2160111 (-) 831 WP_000594963.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MUA86_RS10780 (MUA86_10770) tenA 2160104..2160793 (-) 690 WP_000396068.1 thiaminase II -
  MUA86_RS10785 (MUA86_10775) sceD 2161318..2162013 (-) 696 WP_000752015.1 lytic transglycosylase SceD -
  MUA86_RS10790 (MUA86_10780) ssb 2162402..2162797 (-) 396 WP_262515898.1 single-stranded DNA-binding protein Machinery gene
  MUA86_RS10795 (MUA86_10785) - 2162991..2163431 (+) 441 WP_000846746.1 YwpF-like family protein -
  MUA86_RS10800 (MUA86_10790) fabZ 2163488..2163928 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MUA86_RS10805 (MUA86_10795) murA 2163962..2165227 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MUA86_RS10810 (MUA86_10800) - 2165338..2165571 (-) 234 WP_000384523.1 DUF1146 family protein -
  MUA86_RS10815 (MUA86_10805) - 2166450..2166854 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.05 Da        Isoelectric Point: 5.6824

>NTDB_id=671974 MUA86_RS10790 WP_262515898.1 2162402..2162797(-) (ssb) [Staphylococcus aureus strain IVB6243]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIERYTNQGTLVGITGQMRSRK
YDKDGQTHFATELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=671974 MUA86_RS10790 WP_262515898.1 2162402..2162797(-) (ssb) [Staphylococcus aureus strain IVB6243]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAGATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGCCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

98.473

100

0.985
  ssb Staphylococcus aureus MW2

97.71

100

0.977