Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OIE75_RS19765 Genome accession   NZ_CP109171
Coordinates   4281373..4282047 (+) Length   224 a.a.
NCBI ID   WP_122616757.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01723     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4276373..4287047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE75_RS19745 (OIE75_19790) - 4276611..4277849 (+) 1239 WP_329474021.1 acyltransferase -
  OIE75_RS19750 (OIE75_19795) - 4277842..4279236 (+) 1395 WP_329471628.1 sensor histidine kinase -
  OIE75_RS19755 (OIE75_19800) - 4279233..4279919 (+) 687 WP_307013939.1 response regulator transcription factor -
  OIE75_RS19760 (OIE75_19805) - 4280033..4281376 (+) 1344 WP_307013941.1 histidine kinase -
  OIE75_RS19765 (OIE75_19810) vraR 4281373..4282047 (+) 675 WP_122616757.1 response regulator transcription factor Regulator
  OIE75_RS19770 (OIE75_19815) - 4282132..4283355 (+) 1224 WP_329471629.1 cytochrome P450 -
  OIE75_RS19775 (OIE75_19820) - 4283338..4283607 (-) 270 WP_307013947.1 hypothetical protein -
  OIE75_RS19780 (OIE75_19825) - 4283654..4285261 (-) 1608 WP_329471630.1 ABC transporter permease -
  OIE75_RS19785 (OIE75_19830) - 4285258..4286172 (-) 915 WP_329471631.1 ABC transporter ATP-binding protein -
  OIE75_RS19790 (OIE75_19835) - 4286246..4286752 (+) 507 WP_307013952.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24250.99 Da        Isoelectric Point: 4.6621

>NTDB_id=671972 OIE75_RS19765 WP_122616757.1 4281373..4282047(+) (vraR) [Streptomyces sp. NBC_01723]
MTGRTIRVLIADDQMMVREGFSVLLNAMPDIEVVGEAVNGREAVDRVRELAPDVVLMDIRMPELNGIEATREIVAADGTS
KVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSITKRLITEFSKLSDAPRLMPSAQAAYGD
LTERETEVLVLIAQGLSNSEIAERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 675 bp        

>NTDB_id=671972 OIE75_RS19765 WP_122616757.1 4281373..4282047(+) (vraR) [Streptomyces sp. NBC_01723]
ATGACCGGCCGCACGATCCGGGTACTGATCGCGGACGACCAGATGATGGTGCGCGAGGGCTTCTCGGTCCTGTTGAACGC
GATGCCGGACATCGAGGTCGTCGGCGAGGCGGTCAACGGCCGGGAGGCGGTCGACCGCGTCCGCGAACTCGCACCCGACG
TCGTCCTGATGGACATCCGCATGCCGGAGCTGAACGGCATCGAGGCGACCCGGGAGATCGTCGCCGCCGACGGCACGTCG
AAGGTCCTGGTGCTGACCACCTTCGACCTCGACGAGTACGTGTACCAGGCGCTGCGCGCGGGCGCCTCCGGCTTCCTCCT
CAAGGACGCCTCCGCCCGCCAGCTCGCCGACGGCGTCCGGGTGGTCGCGGCCGGGGAGGCCCTGCTCGCGCCCTCGATCA
CCAAGCGCCTGATCACCGAGTTCTCCAAACTCTCCGACGCCCCGCGCCTGATGCCCTCGGCGCAGGCTGCCTACGGGGAC
CTGACCGAGCGGGAGACGGAGGTCCTGGTGCTGATCGCGCAGGGCCTGTCGAATTCGGAGATCGCCGAGCGCCTGGTGGT
CGCCGAGTCGACGATCAAGACGCACGTCAGCCGCATCCTGGTGAAGCTGGGCCTCAGGGACCGCACCCAGGCGGCGGTGT
TCGCCTACGAGGCACGGCTGGTGACGCCAGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory proteins, luxR family (GerE)

(161-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.318

96.875

0.42
  degU Bacillus subtilis subsp. subtilis str. 168

42.857

96.875

0.415