Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MUA07_RS10540 Genome accession   NZ_CP094750
Coordinates   2147119..2147514 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6248     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2142119..2152514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA07_RS10515 (MUA07_10515) thiE 2142718..2143359 (-) 642 WP_000483148.1 thiamine phosphate synthase -
  MUA07_RS10520 (MUA07_10520) thiM 2143361..2144152 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  MUA07_RS10525 (MUA07_10525) thiD 2144136..2144966 (-) 831 WP_000594944.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  MUA07_RS10530 (MUA07_10530) tenA 2144959..2145648 (-) 690 WP_000396078.1 thiaminase II -
  MUA07_RS10535 (MUA07_10535) sceD 2146035..2146730 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  MUA07_RS10540 (MUA07_10540) ssb 2147119..2147514 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  MUA07_RS10545 (MUA07_10545) - 2147708..2148148 (+) 441 WP_000846746.1 YwpF-like family protein -
  MUA07_RS10550 (MUA07_10550) fabZ 2148205..2148645 (-) 441 WP_252550177.1 3-hydroxyacyl-ACP dehydratase FabZ -
  MUA07_RS10555 (MUA07_10555) murA 2148679..2149944 (-) 1266 WP_252550179.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MUA07_RS10560 (MUA07_10560) - 2150055..2150288 (-) 234 WP_000384523.1 DUF1146 family protein -
  MUA07_RS10565 (MUA07_10565) - 2151049..2151453 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=671932 MUA07_RS10540 WP_000932694.1 2147119..2147514(-) (ssb) [Staphylococcus aureus strain IVB6248]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=671932 MUA07_RS10540 WP_000932694.1 2147119..2147514(-) (ssb) [Staphylococcus aureus strain IVB6248]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992