Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   OIE71_RS24630 Genome accession   NZ_CP109167
Coordinates   5537030..5539225 (+) Length   731 a.a.
NCBI ID   WP_329036120.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01725     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5532030..5544225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE71_RS24605 (OIE71_24615) - 5532287..5533249 (+) 963 WP_147878296.1 thiamine-phosphate kinase -
  OIE71_RS24610 (OIE71_24620) thiD 5533283..5534110 (+) 828 WP_329036114.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OIE71_RS24615 (OIE71_24625) rpmB 5534305..5534490 (-) 186 WP_003957616.1 50S ribosomal protein L28 -
  OIE71_RS24620 (OIE71_24630) - 5534750..5536459 (+) 1710 WP_329036117.1 DAK2 domain-containing protein -
  OIE71_RS24625 (OIE71_24635) - 5536597..5536932 (+) 336 WP_147878293.1 cupin -
  OIE71_RS24630 (OIE71_24640) recG 5537030..5539225 (+) 2196 WP_329036120.1 ATP-dependent DNA helicase RecG Machinery gene
  OIE71_RS24635 (OIE71_24645) rsmD 5539413..5539994 (+) 582 WP_329036122.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  OIE71_RS24640 (OIE71_24650) coaD 5540021..5540500 (+) 480 WP_187280368.1 pantetheine-phosphate adenylyltransferase -
  OIE71_RS24645 (OIE71_24655) - 5540636..5541838 (+) 1203 WP_329036124.1 cell division initiation protein -
  OIE71_RS24650 (OIE71_24660) - 5542042..5542650 (+) 609 WP_147878288.1 DUF177 domain-containing protein -
  OIE71_RS24655 (OIE71_24665) rpmF 5542653..5542826 (+) 174 WP_003965982.1 50S ribosomal protein L32 -
  OIE71_RS24660 (OIE71_24670) rnc 5542846..5543721 (+) 876 WP_147878287.1 ribonuclease III -

Sequence

Protein


Download         Length: 731 a.a.        Molecular weight: 78865.59 Da        Isoelectric Point: 6.2947

>NTDB_id=671829 OIE71_RS24630 WP_329036120.1 5537030..5539225(+) (recG) [Streptomyces sp. NBC_01725]
MDRVSALDESLKKTLGPATAKVMAEQLDLHTVGDLLHHYPRRYEERGQLTRLADLPLDEDVTVVAQVADSRILKFNGGRG
QRLEITLTDGSGRLQLVFFGRGIHKPHKDLLPGSRGMFAGKVSLFNRKLQLAHPTYVPLGTDSDDEAVDAFAGKLIPIYP
ACKGLESWKITKAVDAVLPRATEAVDPLPPSLREGRGFVPLPEALMKVHRPDTKADVAAARDRLKWDEAFVLQVALARRR
HADAQLPAMARRPVAGGLLDAFDAKLPFTLTDGQLKVTREIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLTVVDAGGQ
AAMLAPTEVLAQQHHRSITEMMGQLAEGGLLGGAETATKVVLLTGSMGAAARRHALLDLVTGEAGIVIGTHALIEDKVRF
HDLGLVVVDEQHRFGVEQRDALRSKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIATHVVPAQDKPHF
LARAWERVREEVGKGHQAYVVCPRIGDGEDEPKKKAAAKAAEADGDKRPPLAVLEIAGQLAAGPLAGLRVEVLHGRMQPD
DKDDVMRRFAAGDVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEMPEASPARARL
GAVASTLDGFELSRIDLEQRREGDVLGQAQSGVRSSLRMLAVIEDEEIIAAAREEAVAVVAADPELEALPELRTALDALL
DTEREQYLDKG

Nucleotide


Download         Length: 2196 bp        

>NTDB_id=671829 OIE71_RS24630 WP_329036120.1 5537030..5539225(+) (recG) [Streptomyces sp. NBC_01725]
ATGGATCGCGTGTCCGCGCTGGATGAATCACTCAAGAAGACGCTCGGTCCCGCCACCGCGAAGGTGATGGCCGAGCAGCT
GGATCTGCACACGGTCGGCGATCTGCTGCACCACTACCCGAGGCGGTACGAGGAGCGGGGCCAGCTCACCCGCCTCGCCG
ACCTCCCGCTGGACGAGGACGTCACGGTCGTCGCCCAGGTCGCCGACTCACGCATCCTGAAGTTCAACGGCGGCCGGGGC
CAGCGGCTGGAGATCACCCTCACCGACGGCAGCGGCCGGCTCCAACTGGTCTTCTTCGGCCGGGGGATCCACAAGCCCCA
CAAGGACCTGCTGCCCGGCAGCCGGGGCATGTTCGCGGGCAAGGTCTCCCTGTTCAACCGGAAGCTCCAGCTCGCCCACC
CCACGTATGTGCCGCTCGGTACGGACAGCGACGACGAGGCCGTGGACGCCTTCGCGGGCAAGCTGATCCCGATCTACCCG
GCCTGCAAGGGACTGGAGTCCTGGAAGATCACCAAGGCGGTCGACGCCGTGCTGCCGAGGGCCACCGAGGCCGTCGACCC
ACTGCCGCCCTCCCTGCGCGAGGGCCGCGGCTTCGTACCGCTGCCCGAGGCGCTGATGAAGGTCCACCGGCCCGACACCA
AGGCCGATGTCGCGGCGGCCAGGGACCGGCTCAAGTGGGACGAGGCGTTCGTGCTCCAGGTCGCACTCGCCCGGCGGCGG
CACGCGGACGCCCAACTCCCCGCGATGGCGCGGCGACCGGTGGCGGGGGGCCTGCTCGACGCCTTCGACGCCAAGCTGCC
CTTCACCCTCACCGACGGCCAGTTGAAGGTCACCCGCGAGATCTTCGACGATCTGGCGACCGAGCATCCGATGCACCGCC
TCCTCCAGGGCGAGGTCGGCTCCGGCAAGACGATGGTCGCGCTGCGCGCGATGCTCACGGTGGTGGACGCGGGCGGTCAG
GCCGCGATGCTCGCGCCGACCGAGGTGCTCGCCCAGCAGCACCACCGCTCGATCACCGAGATGATGGGGCAGCTGGCCGA
GGGAGGCCTGCTCGGCGGCGCCGAGACCGCCACCAAGGTGGTGCTGCTCACCGGCTCCATGGGCGCGGCGGCGCGGCGGC
ACGCGCTGCTCGACCTGGTCACCGGCGAGGCCGGGATCGTGATCGGCACGCACGCGCTGATCGAGGACAAGGTGCGGTTC
CACGACCTGGGTCTGGTCGTCGTGGACGAACAGCACCGCTTCGGGGTCGAGCAGCGCGACGCCCTGCGCTCCAAGGGCAA
GCAGCCGCCGCATCTGCTGGTCATGACGGCGACGCCCATTCCCCGTACGGTCGCCATGACCGTCTTCGGCGACCTGGAGA
CGTCCGTCCTGGACCAGCTGCCCGCCGGGCGCTCCCCGATCGCCACCCATGTCGTACCGGCGCAGGACAAGCCGCACTTC
CTGGCGCGTGCCTGGGAACGGGTTCGCGAGGAGGTCGGCAAGGGACACCAGGCGTATGTCGTCTGCCCCCGGATCGGTGA
CGGCGAGGACGAGCCTAAGAAGAAGGCCGCGGCGAAGGCGGCCGAGGCCGACGGTGACAAACGTCCGCCGCTGGCCGTGC
TGGAGATCGCAGGGCAGCTCGCCGCCGGGCCGCTGGCCGGTCTGCGTGTCGAGGTGCTGCACGGCCGTATGCAGCCCGAC
GACAAGGACGACGTGATGCGCCGCTTCGCCGCGGGCGACGTGGACGTCCTGGTCGCCACCACCGTCATCGAGGTCGGTGT
CAACGTCCCCAACGCCACGGCCATGGTGATCATGGACGCGGACCGGTTCGGCGTCTCTCAGCTGCACCAGTTGCGCGGCC
GGGTGGGCCGGGGCTCCGCCCCGGGCCTGTGCCTGCTGGTCTCGGAGATGCCGGAGGCGAGCCCCGCGCGGGCCCGTCTC
GGCGCGGTCGCCTCGACCCTCGACGGCTTCGAGCTCTCCCGTATCGACCTCGAACAGCGCCGCGAGGGCGACGTCCTCGG
CCAGGCCCAGTCCGGGGTCCGCTCCTCGCTGCGGATGCTCGCGGTCATCGAGGACGAGGAAATCATCGCGGCGGCCAGGG
AGGAGGCCGTCGCCGTCGTCGCCGCGGACCCGGAGCTCGAAGCCCTCCCGGAGCTGCGTACGGCACTGGACGCCCTGCTG
GACACGGAGCGGGAGCAGTATCTCGACAAGGGCTGA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(646-708)

DEAD/DEAH box helicase (DEAD)

(292-444)

RecG wedge domain (RecG_wedge)

(13-172)

Helicase conserved C-terminal domain (Helicase_C)

(547-618)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.473

94.938

0.365
  recG/mmsA Streptococcus pneumoniae R6

36.538

99.59

0.364
  recG/mmsA Streptococcus pneumoniae R36A

36.538

99.59

0.364