Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   MUA62_RS02830 Genome accession   NZ_CP094743
Coordinates   588238..588807 (+) Length   189 a.a.
NCBI ID   WP_000872870.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6252     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 583238..593807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA62_RS02805 (MUA62_02805) cysE 584451..585098 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  MUA62_RS02810 (MUA62_02810) cysS 585082..586482 (+) 1401 WP_262542183.1 cysteine--tRNA ligase -
  MUA62_RS02815 (MUA62_02815) - 586475..586879 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  MUA62_RS02820 (MUA62_02820) rlmB 586887..587633 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MUA62_RS02825 (MUA62_02825) - 587633..588157 (+) 525 WP_000664738.1 NYN domain-containing protein -
  MUA62_RS02830 (MUA62_02830) sigH 588238..588807 (+) 570 WP_000872870.1 sigma-70 family RNA polymerase sigma factor Regulator
  MUA62_RS02835 (MUA62_02835) rpmG 588922..589065 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  MUA62_RS02840 (MUA62_02840) secE 589121..589303 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  MUA62_RS02845 (MUA62_02845) nusG 589316..589864 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  MUA62_RS02850 (MUA62_02850) rplK 590045..590467 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  MUA62_RS02855 (MUA62_02855) rplA 590675..591367 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  MUA62_RS02860 (MUA62_02860) rplJ 591639..592139 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  MUA62_RS02865 (MUA62_02865) rplL 592182..592550 (+) 369 WP_176326030.1 50S ribosomal protein L7/L12 -
  MUA62_RS02870 (MUA62_02870) - 592725..593333 (+) 609 WP_000020308.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23083.93 Da        Isoelectric Point: 9.6015

>NTDB_id=671781 MUA62_RS02830 WP_000872870.1 588238..588807(+) (sigH) [Staphylococcus aureus strain IVB6252]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGDQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=671781 MUA62_RS02830 WP_000872870.1 588238..588807(+) (sigH) [Staphylococcus aureus strain IVB6252]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGACCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGCGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979